Analysis of interatomic Contacts of Structural Units in PDB entry:
9ETK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ETK entry

There is 1 chain in PDB entry 9ETK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0PRO 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 9ETK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 28Right-handed alpha
Helix 2
AA2
A
43 55Right-handed alpha
Helix 3
AA3
A
86 113Right-handed alpha
Helix 4
AA4
A
118 128Right-handed alpha
Helix 5
AA5
A
133 144Right-handed alpha
Helix 6
AA6
A
149 157Right-handed alpha
Helix 7
AA7
A
173 183Right-handed alpha
Helix 8
AA8
A
191 196Right-handed 310
Helix 9
AA9
A
198 212Right-handed alpha
Helix 10
AB1
A
225 239Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9ETK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
32 35parallel
Strand 3
A
59 70parallel
Strand 4
A
171 172parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
32 35parallel
Strand 3
A
59 70parallel
Strand 4
A
73 80anti-parallel
Strand 5
A
186 189anti-parallel
Strand 6
A
216 220parallel
Strand 7
A
242 245parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il