Analysis of interatomic Contacts of Structural Units in PDB entry:
9ETM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ETM entry

There are 10 chains in PDB entry 9ETM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 PRO 7SER 48
I
 SER 7HIS 45
E
 ASP 9GLN 54
C
 ALA 77GLN 123
A
 ALA 55GLY 344
H
 PRO 7SER 48
J
 SER 7HIS 45
F
 ASP 9GLN 54
D
 ALA 77GLN 123
B
 ALA 55GLY 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9ETM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
G
7 16Right-handed alpha
Helix 2
AA2
G
17 41Right-handed alpha
Helix 3
AA3
I
11 45Right-handed alpha
Helix 4
AA4
E
10 38Right-handed alpha
Helix 5
AA5
E
48 53Right-handed alpha
Helix 6
AA6
C
78 104Right-handed alpha
Helix 7
AA7
C
104 123Right-handed alpha
Helix 8
AA8
A
62 68Right-handed alpha
Helix 9
AA9
A
291 293Right-handed 310
Helix 10
AB1
H
8 16Right-handed alpha
Helix 11
AB2
H
17 41Right-handed alpha
Helix 12
AB3
J
11 45Right-handed alpha
Helix 13
AB4
F
10 38Right-handed alpha
Helix 14
AB5
F
47 52Right-handed 310
Helix 15
AB6
D
78 104Right-handed alpha
Helix 16
AB7
D
104 123Right-handed alpha
Helix 17
AB8
B
62 68Right-handed alpha
Helix 18
AB9
B
291 293Right-handed 310
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There are 2 sheets in PDB entry 9ETM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 90first strand
Strand 2
A
93 101anti-parallel
Strand 3
A
108 116anti-parallel
Strand 4
A
129 134anti-parallel
Strand 5
A
140 146anti-parallel
Strand 6
A
153 161anti-parallel
Strand 7
A
164 175anti-parallel
Strand 8
A
179 186anti-parallel
Strand 9
A
195 206anti-parallel
Strand 10
A
209 219anti-parallel
Strand 11
A
227 237anti-parallel
Strand 12
A
243 249anti-parallel
Strand 13
A
253 262anti-parallel
Strand 14
A
265 273anti-parallel
Strand 15
A
280 290anti-parallel
Strand 16
A
295 302anti-parallel
Strand 17
A
306 314anti-parallel
Strand 18
A
320 329anti-parallel
Strand 19
A
334 343anti-parallel
Strand 20
A
80 90parallel
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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 90first strand
Strand 2
B
93 101anti-parallel
Strand 3
B
108 116anti-parallel
Strand 4
B
129 134anti-parallel
Strand 5
B
140 147anti-parallel
Strand 6
B
153 161anti-parallel
Strand 7
B
164 175anti-parallel
Strand 8
B
179 186anti-parallel
Strand 9
B
195 206anti-parallel
Strand 10
B
209 219anti-parallel
Strand 11
B
227 237anti-parallel
Strand 12
B
242 249anti-parallel
Strand 13
B
252 262anti-parallel
Strand 14
B
265 274anti-parallel
Strand 15
B
280 290anti-parallel
Strand 16
B
295 302anti-parallel
Strand 17
B
306 314anti-parallel
Strand 18
B
320 329anti-parallel
Strand 19
B
334 343anti-parallel
Strand 20
B
80 90parallel
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