Analysis of interatomic Contacts of Structural Units in PDB entry:
9EVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EVB entry

There are 5 chains in PDB entry 9EVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 37	THR 637
B	ARG 37	THR 637
C	ARG 37	THR 637
D	ARG 37	THR 637
E	ARG 37	THR 637

There are 65 helices in PDB entry 9EVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	98	Right-handed alpha
Helix 2	AA2	A	106	118	Right-handed alpha
Helix 3	AA3	A	178	182	Right-handed 310
Helix 4	AA4	A	196	199	Right-handed 310
Helix 5	AA5	A	362	365	Right-handed 310
Helix 6	AA6	A	367	371	Right-handed 310
Helix 7	AA7	A	382	391	Right-handed alpha
Helix 8	AA8	A	514	536	Right-handed alpha
Helix 9	AA9	A	537	539	Right-handed 310
Helix 10	AB1	A	541	564	Right-handed alpha
Helix 11	AB2	A	565	567	Right-handed 310
Helix 12	AB3	A	574	604	Right-handed alpha
Helix 13	AB4	A	605	636	Right-handed alpha
Helix 14	AB5	B	88	98	Right-handed alpha
Helix 15	AB6	B	106	118	Right-handed alpha
Helix 16	AB7	B	178	182	Right-handed 310
Helix 17	AB8	B	196	199	Right-handed 310
Helix 18	AB9	B	362	365	Right-handed 310
Helix 19	AC1	B	367	371	Right-handed 310
Helix 20	AC2	B	382	391	Right-handed alpha
Helix 21	AC3	B	514	536	Right-handed alpha
Helix 22	AC4	B	537	539	Right-handed 310
Helix 23	AC5	B	541	564	Right-handed alpha
Helix 24	AC6	B	565	567	Right-handed 310
Helix 25	AC7	B	574	604	Right-handed alpha
Helix 26	AC8	B	605	636	Right-handed alpha
Helix 27	AC9	C	88	98	Right-handed alpha
Helix 28	AD1	C	106	118	Right-handed alpha
Helix 29	AD2	C	178	182	Right-handed 310
Helix 30	AD3	C	196	199	Right-handed 310
Helix 31	AD4	C	362	365	Right-handed 310
Helix 32	AD5	C	367	371	Right-handed 310
Helix 33	AD6	C	382	391	Right-handed alpha
Helix 34	AD7	C	514	536	Right-handed alpha
Helix 35	AD8	C	537	539	Right-handed 310
Helix 36	AD9	C	541	564	Right-handed alpha
Helix 37	AE1	C	565	567	Right-handed 310
Helix 38	AE2	C	574	604	Right-handed alpha
Helix 39	AE3	C	605	636	Right-handed alpha
Helix 40	AE4	D	88	98	Right-handed alpha
Helix 41	AE5	D	106	118	Right-handed alpha
Helix 42	AE6	D	178	182	Right-handed 310
Helix 43	AE7	D	196	199	Right-handed 310
Helix 44	AE8	D	362	365	Right-handed 310
Helix 45	AE9	D	367	371	Right-handed 310
Helix 46	AF1	D	382	391	Right-handed alpha
Helix 47	AF2	D	514	536	Right-handed alpha
Helix 48	AF3	D	537	539	Right-handed 310
Helix 49	AF4	D	541	564	Right-handed alpha
Helix 50	AF5	D	565	567	Right-handed 310
Helix 51	AF6	D	574	604	Right-handed alpha
Helix 52	AF7	D	605	636	Right-handed alpha
Helix 53	AF8	E	88	98	Right-handed alpha
Helix 54	AF9	E	106	118	Right-handed alpha
Helix 55	AG1	E	178	182	Right-handed 310
Helix 56	AG2	E	196	199	Right-handed 310
Helix 57	AG3	E	362	365	Right-handed 310
Helix 58	AG4	E	367	371	Right-handed 310
Helix 59	AG5	E	382	391	Right-handed alpha
Helix 60	AG6	E	514	536	Right-handed alpha
Helix 61	AG7	E	537	539	Right-handed 310
Helix 62	AG8	E	541	564	Right-handed alpha
Helix 63	AG9	E	565	567	Right-handed 310
Helix 64	AH1	E	574	604	Right-handed alpha
Helix 65	AH2	E	605	636	Right-handed alpha

There are 30 sheets in PDB entry 9EVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	45	first strand
Strand 2	A	166	174	anti-parallel
Strand 3	A	63	73	anti-parallel
Strand 4	A	131	136	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	77	82	anti-parallel
Strand 3	A	141	149	anti-parallel
Strand 4	A	51	58	anti-parallel
Strand 5	A	193	194	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	212	first strand
Strand 2	A	298	306	anti-parallel
Strand 3	A	231	238	anti-parallel
Strand 4	A	269	274	anti-parallel
Strand 5	A	261	262	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	282	287	anti-parallel
Strand 3	A	246	251	anti-parallel
Strand 4	A	256	259	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	379	first strand
Strand 2	A	407	415	anti-parallel
Strand 3	A	420	432	anti-parallel
Strand 4	A	348	360	anti-parallel
Strand 5	A	328	343	anti-parallel
Strand 6	A	461	466	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	399	first strand
Strand 2	A	445	454	anti-parallel
Strand 3	A	501	513	anti-parallel
Strand 4	A	482	495	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	45	first strand
Strand 2	B	166	174	anti-parallel
Strand 3	B	63	73	anti-parallel
Strand 4	B	131	136	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	77	82	anti-parallel
Strand 3	B	141	149	anti-parallel
Strand 4	B	51	58	anti-parallel
Strand 5	B	193	194	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	212	first strand
Strand 2	B	298	306	anti-parallel
Strand 3	B	231	238	anti-parallel
Strand 4	B	269	274	anti-parallel
Strand 5	B	261	262	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	222	first strand
Strand 2	B	282	287	anti-parallel
Strand 3	B	246	251	anti-parallel
Strand 4	B	256	259	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	379	first strand
Strand 2	B	407	415	anti-parallel
Strand 3	B	420	432	anti-parallel
Strand 4	B	348	360	anti-parallel
Strand 5	B	328	343	anti-parallel
Strand 6	B	461	466	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	399	first strand
Strand 2	B	445	454	anti-parallel
Strand 3	B	501	513	anti-parallel
Strand 4	B	482	495	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	45	first strand
Strand 2	C	166	174	anti-parallel
Strand 3	C	63	73	anti-parallel
Strand 4	C	131	136	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	C	141	149	anti-parallel
Strand 4	C	51	58	anti-parallel
Strand 5	C	193	194	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	212	first strand
Strand 2	C	298	306	anti-parallel
Strand 3	C	231	238	anti-parallel
Strand 4	C	269	274	anti-parallel
Strand 5	C	261	262	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	222	first strand
Strand 2	C	282	287	anti-parallel
Strand 3	C	246	251	anti-parallel
Strand 4	C	256	259	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	407	415	anti-parallel
Strand 3	C	420	432	anti-parallel
Strand 4	C	348	360	anti-parallel
Strand 5	C	328	343	anti-parallel
Strand 6	C	461	466	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	399	first strand
Strand 2	C	445	454	anti-parallel
Strand 3	C	501	513	anti-parallel
Strand 4	C	482	495	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	45	first strand
Strand 2	D	166	174	anti-parallel
Strand 3	D	63	73	anti-parallel
Strand 4	D	131	136	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	77	82	anti-parallel
Strand 3	D	141	149	anti-parallel
Strand 4	D	51	58	anti-parallel
Strand 5	D	193	194	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	212	first strand
Strand 2	D	298	306	anti-parallel
Strand 3	D	231	238	anti-parallel
Strand 4	D	269	274	anti-parallel
Strand 5	D	261	262	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	222	first strand
Strand 2	D	282	287	anti-parallel
Strand 3	D	246	251	anti-parallel
Strand 4	D	256	259	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	379	first strand
Strand 2	D	407	415	anti-parallel
Strand 3	D	420	432	anti-parallel
Strand 4	D	348	360	anti-parallel
Strand 5	D	328	343	anti-parallel
Strand 6	D	461	466	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	399	first strand
Strand 2	D	445	454	anti-parallel
Strand 3	D	501	513	anti-parallel
Strand 4	D	482	495	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	45	first strand
Strand 2	E	166	174	anti-parallel
Strand 3	E	63	73	anti-parallel
Strand 4	E	131	136	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	122	first strand
Strand 2	E	77	82	anti-parallel
Strand 3	E	141	149	anti-parallel
Strand 4	E	51	58	anti-parallel
Strand 5	E	193	194	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	212	first strand
Strand 2	E	298	306	anti-parallel
Strand 3	E	231	238	anti-parallel
Strand 4	E	269	274	anti-parallel
Strand 5	E	261	262	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	222	first strand
Strand 2	E	282	287	anti-parallel
Strand 3	E	246	251	anti-parallel
Strand 4	E	256	259	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	379	first strand
Strand 2	E	407	415	anti-parallel
Strand 3	E	420	432	anti-parallel
Strand 4	E	348	360	anti-parallel
Strand 5	E	328	343	anti-parallel
Strand 6	E	461	466	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	399	first strand
Strand 2	E	445	454	anti-parallel
Strand 3	E	501	513	anti-parallel
Strand 4	E	482	495	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EVB