Analysis of interatomic Contacts of Structural Units in PDB entry:
9EVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EVQ entry

There are 2 chains in PDB entry 9EVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 127ASP 347
A
 GLN 126ALA 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 9EVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
160 173Right-handed alpha
Helix 2
AA2
B
179 187Right-handed alpha
Helix 3
AA3
B
249 265Right-handed alpha
Helix 4
AA4
B
278 285Right-handed alpha
Helix 5
AA5
B
291 306Right-handed alpha
Helix 6
AA6
B
320 322Right-handed 310
Helix 7
AA7
B
325 333Right-handed alpha
Helix 8
AA8
A
160 173Right-handed alpha
Helix 9
AA9
A
179 187Right-handed alpha
Helix 10
AB1
A
249 265Right-handed alpha
Helix 11
AB2
A
278 285Right-handed alpha
Helix 12
AB3
A
291 297Right-handed alpha
Helix 13
AB4
A
298 306Right-handed alpha
Helix 14
AB5
A
320 322Right-handed 310
Helix 15
AB6
A
325 333Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9EVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
308 309parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
175 177anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 289first strand
Strand 2
B
313 318anti-parallel
Strand 3
B
269 274anti-parallel
Strand 4
B
231 241parallel
Strand 5
B
216 228anti-parallel
Strand 6
B
203 211anti-parallel
Strand 7
B
151 157anti-parallel
Strand 8
B
337 339parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
308 309parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
175 177anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
313 318anti-parallel
Strand 3
A
269 274anti-parallel
Strand 4
A
231 241parallel
Strand 5
A
217 228anti-parallel
Strand 6
A
204 211anti-parallel
Strand 7
A
151 157anti-parallel
Strand 8
A
337 339parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il