Analysis of interatomic Contacts of Structural Units in PDB entry:
9EX9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EX9 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 9EX9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ARG 1266
B	GLU 8	PHE 1162
C	GLN 2	LEU 305
E	MET 1	ALA 184
F	ILE 62	TYR 164
G	SER 2	VAL 159
J	VAL 2	ILE 62
S	ASN 36	PRO 227
S	PRO 229	GLU 231
S	PRO 233	ASP 257

There are141 helices in PDB entry 9EX9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	19	Right-handed alpha
Helix 2	AA2	A	38	42	Right-handed 310
Helix 3	AA3	A	55	59	Right-handed 310
Helix 4	AA4	A	78	87	Right-handed alpha
Helix 5	AA5	A	113	127	Right-handed alpha
Helix 6	AA6	A	161	171	Right-handed alpha
Helix 7	AA7	A	173	175	Right-handed 310
Helix 8	AA8	A	176	181	Right-handed alpha
Helix 9	AA9	A	185	188	Right-handed 310
Helix 10	AB1	A	218	233	Right-handed alpha
Helix 11	AB2	A	236	249	Right-handed alpha
Helix 12	AB3	A	250	253	Right-handed 310
Helix 13	AB4	A	261	267	Right-handed 310
Helix 14	AB5	A	272	277	Right-handed alpha
Helix 15	AB6	A	304	309	Right-handed alpha
Helix 16	AB7	A	321	331	Right-handed alpha
Helix 17	AB8	A	385	387	Right-handed 310
Helix 18	AB9	A	405	407	Right-handed 310
Helix 19	AC1	A	408	413	Right-handed alpha
Helix 20	AC2	A	428	438	Right-handed alpha
Helix 21	AC3	A	440	445	Right-handed 310
Helix 22	AC4	A	459	469	Right-handed alpha
Helix 23	AC5	A	475	484	Right-handed alpha
Helix 24	AC6	A	485	487	Right-handed 310
Helix 25	AC7	A	499	508	Right-handed alpha
Helix 26	AC8	A	529	534	Right-handed alpha
Helix 27	AC9	A	540	549	Right-handed alpha
Helix 28	AD1	A	550	573	Right-handed alpha
Helix 29	AD2	A	577	582	Right-handed alpha
Helix 30	AD3	A	585	615	Right-handed alpha
Helix 31	AD4	A	622	656	Right-handed alpha
Helix 32	AD5	A	659	668	Right-handed alpha
Helix 33	AD6	A	672	681	Right-handed alpha
Helix 34	AD7	A	711	715	Right-handed 310
Helix 35	AD8	A	727	764	Right-handed alpha
Helix 36	AD9	A	809	821	Right-handed alpha
Helix 37	AE1	A	841	846	Right-handed 310
Helix 38	AE2	A	856	875	Right-handed alpha
Helix 39	AE3	A	882	893	Right-handed alpha
Helix 40	AE4	A	901	919	Right-handed alpha
Helix 41	AE5	A	925	944	Right-handed alpha
Helix 42	AE6	A	960	970	Right-handed alpha
Helix 43	AE7	A	984	996	Right-handed alpha
Helix 44	AE8	A	1001	1004	Right-handed 310
Helix 45	AE9	A	1023	1031	Right-handed alpha
Helix 46	AF1	A	1033	1047	Right-handed alpha
Helix 47	AF2	A	1077	1093	Right-handed alpha
Helix 48	AF3	A	1130	1136	Right-handed 310
Helix 49	AF4	A	1146	1154	Right-handed alpha
Helix 50	AF5	A	1155	1170	Right-handed alpha
Helix 51	AF6	A	1175	1177	Right-handed 310
Helix 52	AF7	A	1178	1190	Right-handed alpha
Helix 53	AF8	A	1207	1215	Right-handed alpha
Helix 54	AF9	A	1218	1227	Right-handed alpha
Helix 55	AG1	A	1234	1241	Right-handed alpha
Helix 56	AG2	A	1247	1252	Right-handed 310
Helix 57	AG3	A	1258	1263	Right-handed alpha
Helix 58	AG4	B	9	19	Right-handed alpha
Helix 59	AG5	B	21	25	Right-handed 310
Helix 60	AG6	B	28	44	Right-handed alpha
Helix 61	AG7	B	44	51	Right-handed alpha
Helix 62	AG8	B	81	89	Right-handed alpha
Helix 63	AG9	B	233	242	Right-handed alpha
Helix 64	AH1	B	244	253	Right-handed alpha
Helix 65	AH2	B	257	277	Right-handed alpha
Helix 66	AH3	B	282	298	Right-handed alpha
Helix 67	AH4	B	303	314	Right-handed alpha
Helix 68	AH5	B	316	320	Right-handed 310
Helix 69	AH6	B	323	344	Right-handed alpha
Helix 70	AH7	B	345	348	Right-handed 310
Helix 71	AH8	B	353	357	Right-handed 310
Helix 72	AH9	B	361	392	Right-handed alpha
Helix 73	AI1	B	406	417	Right-handed alpha
Helix 74	AI2	B	435	440	Right-handed alpha
Helix 75	AI3	B	463	467	Right-handed 310
Helix 76	AI4	B	498	517	Right-handed alpha
Helix 77	AI5	B	518	521	Right-handed 310
Helix 78	AI6	B	541	543	Right-handed 310
Helix 79	AI7	B	544	558	Right-handed alpha
Helix 80	AI8	B	599	603	Right-handed 310
Helix 81	AI9	B	604	611	Right-handed alpha
Helix 82	AJ1	B	612	614	Right-handed 310
Helix 83	AJ2	B	615	623	Right-handed alpha
Helix 84	AJ3	B	632	637	Right-handed alpha
Helix 85	AJ4	B	643	649	Right-handed alpha
Helix 86	AJ5	B	651	656	Right-handed alpha
Helix 87	AJ6	B	664	669	Right-handed 310
Helix 88	AJ7	B	672	676	Right-handed 310
Helix 89	AJ8	B	678	682	Right-handed 310
Helix 90	AJ9	B	683	695	Right-handed alpha
Helix 91	AK1	B	725	731	Right-handed alpha
Helix 92	AK2	B	733	737	Right-handed 310
Helix 93	AK3	B	762	768	Right-handed alpha
Helix 94	AK4	B	784	789	Right-handed alpha
Helix 95	AK5	B	898	902	Right-handed 310
Helix 96	AK6	B	917	923	Right-handed alpha
Helix 97	AK7	B	925	941	Right-handed alpha
Helix 98	AK8	B	961	977	Right-handed alpha
Helix 99	AK9	B	981	991	Right-handed alpha
Helix 100	AL1	B	1021	1025	Right-handed 310
Helix 101	AL2	B	1044	1048	Right-handed 310
Helix 102	AL3	B	1054	1065	Right-handed alpha
Helix 103	AL4	B	1066	1074	Right-handed alpha
Helix 104	AL5	B	1077	1081	Right-handed 310
Helix 105	AL6	B	1103	1109	Right-handed alpha
Helix 106	AL7	B	1121	1134	Right-handed alpha
Helix 107	AL8	C	15	30	Right-handed alpha
Helix 108	AL9	C	48	58	Right-handed alpha
Helix 109	AM1	C	59	64	Right-handed 310
Helix 110	AM2	C	65	67	Right-handed 310
Helix 111	AM3	C	68	75	Right-handed alpha
Helix 112	AM4	C	117	123	Right-handed 310
Helix 113	AM5	C	151	156	Right-handed alpha
Helix 114	AM6	C	162	174	Right-handed alpha
Helix 115	AM7	C	207	229	Right-handed alpha
Helix 116	AM8	C	255	265	Right-handed alpha
Helix 117	AM9	C	278	282	Right-handed 310
Helix 118	AN1	C	283	304	Right-handed alpha
Helix 119	AN2	E	4	22	Right-handed alpha
Helix 120	AN3	E	28	33	Right-handed 310
Helix 121	AN4	E	98	101	Right-handed 310
Helix 122	AN5	E	117	129	Right-handed alpha
Helix 123	AN6	E	146	152	Right-handed alpha
Helix 124	AN7	F	63	74	Right-handed alpha
Helix 125	AN8	F	78	95	Right-handed alpha
Helix 126	AN9	F	105	111	Right-handed 310
Helix 127	AO1	F	112	123	Right-handed alpha
Helix 128	AO2	F	143	162	Right-handed alpha
Helix 129	AO3	G	15	19	Right-handed 310
Helix 130	AO4	G	22	36	Right-handed alpha
Helix 131	AO5	G	110	113	Right-handed 310
Helix 132	AO6	J	14	23	Right-handed alpha
Helix 133	AO7	J	27	33	Right-handed alpha
Helix 134	AO8	J	37	47	Right-handed alpha
Helix 135	AO9	S	37	51	Right-handed alpha
Helix 136	AP1	S	72	80	Right-handed alpha
Helix 137	AP2	S	81	85	Right-handed 310
Helix 138	AP3	S	101	108	Right-handed alpha
Helix 139	AP4	S	112	131	Right-handed alpha
Helix 140	AP5	S	135	139	Right-handed 310
Helix 141	AP6	S	213	217	Right-handed 310

There are 41 sheets in PDB entry 9EX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1229	1230	first strand
Strand 2	A	4	11	anti-parallel
Strand 3	B	1136	1142	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	64	67	parallel
Strand 3	A	194	197	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	190	191	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	151	153	anti-parallel
Strand 3	A	159	160	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	B	1052	1053	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1027	1029	first strand
Strand 2	A	285	292	anti-parallel
Strand 3	A	420	424	anti-parallel
Strand 4	A	375	379	anti-parallel
Strand 5	A	389	396	anti-parallel
Strand 6	A	300	303	parallel
Strand 7	A	402	404	anti-parallel
Strand 8	A	285	292	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	316	first strand
Strand 2	A	365	369	anti-parallel
Strand 3	A	334	339	anti-parallel
Strand 4	A	344	346	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	522	523	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	685	first strand
Strand 2	A	717	718	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	768	first strand
Strand 2	A	774	776	anti-parallel
Strand 3	A	779	782	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	799	first strand
Strand 2	A	835	838	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	825	826	first strand
Strand 2	A	831	832	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1106	1111	first strand
Strand 2	A	1117	1127	anti-parallel
Strand 3	A	976	982	anti-parallel
Strand 4	A	1142	1144	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	998	999	first strand
Strand 2	A	1094	1095	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1008	1012	first strand
Strand 2	A	1015	1022	anti-parallel
Strand 3	A	1065	1074	anti-parallel
Strand 4	A	1051	1062	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	138	first strand
Strand 2	F	128	131	anti-parallel
Strand 3	A	1253	1256	anti-parallel
Strand 4	G	59	62	anti-parallel
Strand 5	G	65	77	anti-parallel
Strand 6	G	3	14	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	138	first strand
Strand 2	F	128	131	anti-parallel
Strand 3	A	1253	1256	anti-parallel
Strand 4	G	59	62	anti-parallel
Strand 5	G	65	77	anti-parallel
Strand 6	G	43	50	anti-parallel
Strand 7	G	39	40	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	59	first strand
Strand 2	B	64	76	anti-parallel
Strand 3	B	93	108	anti-parallel
Strand 4	B	111	120	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	59	first strand
Strand 2	B	64	76	anti-parallel
Strand 3	B	93	108	anti-parallel
Strand 4	B	128	131	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	164	167	anti-parallel
Strand 3	B	426	428	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	169	171	anti-parallel
Strand 3	B	443	445	parallel
Strand 4	B	485	487	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	184	first strand
Strand 2	B	187	195	anti-parallel
Strand 3	B	205	213	anti-parallel
Strand 4	B	216	223	anti-parallel
Strand 5	B	231	232	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	587	593	anti-parallel
Strand 3	B	627	631	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	587	593	anti-parallel
Strand 3	B	660	661	anti-parallel
Strand 4	B	640	641	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	540	first strand
Strand 2	B	528	532	anti-parallel
Strand 3	B	577	581	parallel
Strand 4	B	567	571	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	715	first strand
Strand 2	B	772	783	anti-parallel
Strand 3	B	864	875	anti-parallel
Strand 4	B	852	861	anti-parallel
Strand 5	B	812	813	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	715	first strand
Strand 2	B	772	783	anti-parallel
Strand 3	B	864	875	anti-parallel
Strand 4	B	852	861	anti-parallel
Strand 5	J	60	61	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	724	first strand
Strand 2	B	952	953	parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	992	993	first strand
Strand 2	B	1008	1017	anti-parallel
Strand 3	B	882	884	anti-parallel
Strand 4	B	891	897	anti-parallel
Strand 5	B	758	761	parallel
Strand 6	B	913	915	anti-parallel
Strand 7	B	740	746	parallel
Strand 8	B	1008	1017	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	824	first strand
Strand 2	B	840	841	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1084	1087	first strand
Strand 2	B	1115	1118	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1095	1097	first strand
Strand 2	B	1100	1102	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	13	first strand
Strand 2	C	195	203	anti-parallel
Strand 3	C	188	190	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	183	184	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	43	first strand
Strand 2	C	138	144	anti-parallel
Strand 3	C	78	86	anti-parallel
Strand 4	C	100	104	anti-parallel
Strand 5	C	111	113	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	126	127	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	245	first strand
Strand 2	C	250	253	anti-parallel
Strand 3	C	273	275	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	40	first strand
Strand 2	E	45	52	anti-parallel
Strand 3	E	58	65	anti-parallel
Strand 4	E	82	85	parallel
Strand 5	E	94	96	parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	115	first strand
Strand 2	E	161	168	anti-parallel
Strand 3	E	172	181	anti-parallel
Strand 4	E	141	143	parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	91	first strand
Strand 2	G	97	100	anti-parallel
Strand 3	G	104	108	anti-parallel
Strand 4	G	152	158	parallel
Strand 5	G	136	144	anti-parallel
Strand 6	G	84	91	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	116	first strand
Strand 2	G	124	126	anti-parallel
Strand 3	G	130	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EX9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EX9