Analysis of interatomic Contacts of Structural Units in PDB entry:
9EYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EYD entry

There are 2 chains in PDB entry 9EYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13THR 487
B
 GLN 3SER 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9EYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
36 75Right-handed alpha
Helix 3
AA3
A
79 89Right-handed alpha
Helix 4
AA4
A
90 120Right-handed alpha
Helix 5
AA5
A
129 147Right-handed alpha
Helix 6
AA6
A
150 179Right-handed alpha
Helix 7
AA7
A
202 218Right-handed alpha
Helix 8
AA8
A
222 228Right-handed alpha
Helix 9
AA9
A
232 263Right-handed alpha
Helix 10
AB1
A
281 289Right-handed alpha
Helix 11
AB2
A
295 328Right-handed alpha
Helix 12
AB3
A
345 356Right-handed alpha
Helix 13
AB4
A
357 359Right-handed 310
Helix 14
AB5
A
360 365Right-handed alpha
Helix 15
AB6
A
366 403Right-handed alpha
Helix 16
AB7
A
405 409Right-handed 310
Helix 17
AB8
A
417 433Right-handed alpha
Helix 18
AB9
A
436 441Right-handed alpha
Helix 19
AC1
A
446 453Right-handed alpha
Helix 20
AC2
A
454 471Right-handed alpha
Helix 21
AC3
B
61 64Right-handed 310
Helix 22
AC4
B
86 90Right-handed 310
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There are 2 sheets in PDB entry 9EYD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
116 120parallel
Strand 3
B
91 98anti-parallel
Strand 4
B
32 38anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
58 59anti-parallel
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