Analysis of interatomic Contacts of Structural Units in PDB entry:
9EYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EYJ entry

There are 3 chains in PDB entry 9EYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 202LEU 504
B
 LEU 202LEU 506
D
 A 1 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9EYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
209 217Right-handed alpha
Helix 2
AA2
A
231 250Right-handed alpha
Helix 3
AA3
A
254 263Right-handed alpha
Helix 4
AA4
A
280 291Right-handed alpha
Helix 5
AA5
A
291 303Right-handed alpha
Helix 6
AA6
A
316 328Right-handed alpha
Helix 7
AA7
A
357 362Right-handed 310
Helix 8
AA8
A
366 370Right-handed 310
Helix 9
AA9
A
398 409Right-handed alpha
Helix 10
AB1
A
433 448Right-handed alpha
Helix 11
AB2
A
463 475Right-handed alpha
Helix 12
AB3
A
501 503Right-handed 310
Helix 13
AB4
B
208 217Right-handed alpha
Helix 14
AB5
B
234 250Right-handed alpha
Helix 15
AB6
B
254 263Right-handed alpha
Helix 16
AB7
B
266 270Right-handed 310
Helix 17
AB8
B
281 291Right-handed alpha
Helix 18
AB9
B
291 303Right-handed alpha
Helix 19
AC1
B
316 328Right-handed alpha
Helix 20
AC2
B
357 362Right-handed 310
Helix 21
AC3
B
398 409Right-handed alpha
Helix 22
AC4
B
433 451Right-handed alpha
Helix 23
AC5
B
463 475Right-handed alpha
Helix 24
AC6
B
501 503Right-handed 310
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There are 5 sheets in PDB entry 9EYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
307 312parallel
Strand 3
A
333 339parallel
Strand 4
A
344 350anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 230first strand
Strand 2
A
270 274parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 378first strand
Strand 2
A
415 420anti-parallel
Strand 3
A
386 392parallel
Strand 4
A
455 461parallel
Strand 5
A
480 483parallel
Strand 6
A
496 499anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 227first strand
Strand 2
B
307 314parallel
Strand 3
B
333 337parallel
Strand 4
B
346 350anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 378first strand
Strand 2
B
414 420anti-parallel
Strand 3
B
386 392parallel
Strand 4
B
455 458parallel
Strand 5
B
480 482parallel
Strand 6
B
498 499anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il