Analysis of interatomic Contacts of Structural Units in PDB entry:
9EZE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EZE entry

There are 6 chains in PDB entry 9EZE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 386	SER 508
B	GLU 20	SER 239
C	ASP 20	GLU 232
D	GLU 386	SER 508
E	GLU 20	SER 239
F	ASP 20	GLY 231

There are 28 helices in PDB entry 9EZE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	386	416	Right-handed alpha
Helix 2	AA2	A	424	428	Right-handed 310
Helix 3	AA3	A	429	464	Right-handed alpha
Helix 4	AA4	A	473	482	Right-handed alpha
Helix 5	AA5	A	486	495	Right-handed alpha
Helix 6	AA6	A	498	506	Right-handed alpha
Helix 7	AA7	B	94	96	Right-handed 310
Helix 8	AA8	B	107	111	Right-handed 310
Helix 9	AA9	B	180	182	Right-handed 310
Helix 10	AB1	B	211	213	Right-handed 310
Helix 11	AB2	B	225	228	Right-handed 310
Helix 12	AB3	C	98	102	Right-handed 310
Helix 13	AB4	C	140	145	Right-handed alpha
Helix 14	AB5	C	202	207	Right-handed alpha
Helix 15	AB6	D	387	416	Right-handed alpha
Helix 16	AB7	D	424	428	Right-handed 310
Helix 17	AB8	D	429	464	Right-handed alpha
Helix 18	AB9	D	473	482	Right-handed alpha
Helix 19	AC1	D	486	495	Right-handed alpha
Helix 20	AC2	D	498	506	Right-handed alpha
Helix 21	AC3	E	94	96	Right-handed 310
Helix 22	AC4	E	107	111	Right-handed 310
Helix 23	AC5	E	180	182	Right-handed 310
Helix 24	AC6	E	211	213	Right-handed 310
Helix 25	AC7	E	225	228	Right-handed 310
Helix 26	AC8	F	98	102	Right-handed 310
Helix 27	AC9	F	140	145	Right-handed alpha
Helix 28	AD1	F	202	207	Right-handed alpha

There are 22 sheets in PDB entry 9EZE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	26	first strand
Strand 2	B	37	44	anti-parallel
Strand 3	B	98	103	anti-parallel
Strand 4	B	88	93	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	131	135	parallel
Strand 3	B	112	120	anti-parallel
Strand 4	B	54	60	anti-parallel
Strand 5	B	67	72	anti-parallel
Strand 6	B	78	80	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	131	135	parallel
Strand 3	B	112	120	anti-parallel
Strand 4	B	123	127	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	159	169	anti-parallel
Strand 3	B	200	209	anti-parallel
Strand 4	B	187	189	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	159	169	anti-parallel
Strand 3	B	200	209	anti-parallel
Strand 4	B	193	194	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	178	first strand
Strand 2	B	219	224	anti-parallel
Strand 3	B	229	234	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	38	44	anti-parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	81	86	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	121	126	parallel
Strand 3	C	103	109	anti-parallel
Strand 4	C	52	57	anti-parallel
Strand 5	C	64	68	anti-parallel
Strand 6	C	72	73	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	121	126	parallel
Strand 3	C	103	109	anti-parallel
Strand 4	C	116	117	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	137	first strand
Strand 2	C	148	158	anti-parallel
Strand 3	C	192	201	anti-parallel
Strand 4	C	178	182	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	164	169	anti-parallel
Strand 3	C	210	216	anti-parallel
Strand 4	C	224	229	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	26	first strand
Strand 2	E	37	44	anti-parallel
Strand 3	E	98	103	anti-parallel
Strand 4	E	88	93	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	131	135	parallel
Strand 3	E	112	120	anti-parallel
Strand 4	E	54	60	anti-parallel
Strand 5	E	67	72	anti-parallel
Strand 6	E	78	80	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	131	135	parallel
Strand 3	E	112	120	anti-parallel
Strand 4	E	123	127	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	148	first strand
Strand 2	E	159	169	anti-parallel
Strand 3	E	200	209	anti-parallel
Strand 4	E	187	189	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	148	first strand
Strand 2	E	159	169	anti-parallel
Strand 3	E	200	209	anti-parallel
Strand 4	E	193	194	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	178	first strand
Strand 2	E	219	224	anti-parallel
Strand 3	E	229	234	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	26	first strand
Strand 2	F	38	44	anti-parallel
Strand 3	F	89	94	anti-parallel
Strand 4	F	81	86	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	33	first strand
Strand 2	F	121	126	parallel
Strand 3	F	103	109	anti-parallel
Strand 4	F	52	57	anti-parallel
Strand 5	F	64	68	anti-parallel
Strand 6	F	72	73	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	33	first strand
Strand 2	F	121	126	parallel
Strand 3	F	103	109	anti-parallel
Strand 4	F	116	117	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	137	first strand
Strand 2	F	148	158	anti-parallel
Strand 3	F	192	201	anti-parallel
Strand 4	F	178	182	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	172	173	first strand
Strand 2	F	164	169	anti-parallel
Strand 3	F	210	216	anti-parallel
Strand 4	F	224	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EZE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EZE