Analysis of interatomic Contacts of Structural Units in PDB entry:
9F04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F04 entry

There are 8 chains in PDB entry 9F04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	THR 12	GLN 582
F	THR 12	GLN 582
H	THR 12	GLN 582
E	THR 12	GLN 582
D	ALA 2	ALA 140
C	ALA 2	ALA 140
B	ALA 2	ALA 140
A	ALA 2	ALA 140

There are 72 helices in PDB entry 9F04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	55	63	Right-handed alpha
Helix 2	AA2	G	66	77	Right-handed alpha
Helix 3	AA3	G	113	118	Right-handed 310
Helix 4	AA4	G	202	213	Right-handed alpha
Helix 5	AA5	G	229	233	Right-handed 310
Helix 6	AA6	G	250	260	Right-handed alpha
Helix 7	AA7	G	320	325	Right-handed alpha
Helix 8	AA8	G	326	330	Right-handed 310
Helix 9	AA9	G	341	358	Right-handed alpha
Helix 10	AB1	G	373	383	Right-handed alpha
Helix 11	AB2	G	409	422	Right-handed alpha
Helix 12	AB3	G	445	455	Right-handed alpha
Helix 13	AB4	G	485	490	Right-handed alpha
Helix 14	AB5	G	490	513	Right-handed alpha
Helix 15	AB6	G	521	539	Right-handed alpha
Helix 16	AB7	F	55	63	Right-handed alpha
Helix 17	AB8	F	66	77	Right-handed alpha
Helix 18	AB9	F	113	118	Right-handed 310
Helix 19	AC1	F	202	213	Right-handed alpha
Helix 20	AC2	F	229	233	Right-handed 310
Helix 21	AC3	F	250	260	Right-handed alpha
Helix 22	AC4	F	320	325	Right-handed alpha
Helix 23	AC5	F	326	330	Right-handed 310
Helix 24	AC6	F	341	358	Right-handed alpha
Helix 25	AC7	F	373	383	Right-handed alpha
Helix 26	AC8	F	409	422	Right-handed alpha
Helix 27	AC9	F	445	455	Right-handed alpha
Helix 28	AD1	F	485	490	Right-handed alpha
Helix 29	AD2	F	490	513	Right-handed alpha
Helix 30	AD3	F	521	539	Right-handed alpha
Helix 31	AD4	H	55	63	Right-handed alpha
Helix 32	AD5	H	66	77	Right-handed alpha
Helix 33	AD6	H	113	118	Right-handed 310
Helix 34	AD7	H	202	213	Right-handed alpha
Helix 35	AD8	H	229	233	Right-handed 310
Helix 36	AD9	H	250	260	Right-handed alpha
Helix 37	AE1	H	320	325	Right-handed alpha
Helix 38	AE2	H	326	330	Right-handed 310
Helix 39	AE3	H	341	358	Right-handed alpha
Helix 40	AE4	H	373	383	Right-handed alpha
Helix 41	AE5	H	409	422	Right-handed alpha
Helix 42	AE6	H	445	455	Right-handed alpha
Helix 43	AE7	H	485	490	Right-handed alpha
Helix 44	AE8	H	490	513	Right-handed alpha
Helix 45	AE9	H	521	539	Right-handed alpha
Helix 46	AF1	E	55	63	Right-handed alpha
Helix 47	AF2	E	66	77	Right-handed alpha
Helix 48	AF3	E	113	118	Right-handed 310
Helix 49	AF4	E	202	213	Right-handed alpha
Helix 50	AF5	E	229	233	Right-handed 310
Helix 51	AF6	E	250	260	Right-handed alpha
Helix 52	AF7	E	320	325	Right-handed alpha
Helix 53	AF8	E	326	330	Right-handed 310
Helix 54	AF9	E	341	358	Right-handed alpha
Helix 55	AG1	E	373	383	Right-handed alpha
Helix 56	AG2	E	409	422	Right-handed alpha
Helix 57	AG3	E	445	455	Right-handed alpha
Helix 58	AG4	E	485	490	Right-handed alpha
Helix 59	AG5	E	490	513	Right-handed alpha
Helix 60	AG6	E	521	539	Right-handed alpha
Helix 61	AG7	D	11	13	Right-handed 310
Helix 62	AG8	D	72	77	Right-handed alpha
Helix 63	AG9	D	81	88	Right-handed 310
Helix 64	AH1	C	11	13	Right-handed 310
Helix 65	AH2	C	72	77	Right-handed alpha
Helix 66	AH3	C	81	88	Right-handed 310
Helix 67	AH4	B	11	13	Right-handed 310
Helix 68	AH5	B	72	77	Right-handed alpha
Helix 69	AH6	B	81	88	Right-handed 310
Helix 70	AH7	A	11	13	Right-handed 310
Helix 71	AH8	A	72	77	Right-handed alpha
Helix 72	AH9	A	81	88	Right-handed 310

There are 40 sheets in PDB entry 9F04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	53	first strand
Strand 2	G	87	91	anti-parallel
Strand 3	G	36	40	parallel
Strand 4	G	334	337	parallel
Strand 5	G	363	367	parallel
Strand 6	G	389	392	parallel
Strand 7	G	457	458	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	102	first strand
Strand 2	G	105	109	anti-parallel
Strand 3	G	265	269	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	143	150	first strand
Strand 2	G	131	138	anti-parallel
Strand 3	G	120	126	anti-parallel
Strand 4	G	303	307	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	216	220	first strand
Strand 2	G	154	158	anti-parallel
Strand 3	G	246	248	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	188	194	first strand
Strand 2	G	178	185	anti-parallel
Strand 3	G	165	171	anti-parallel
Strand 4	G	236	240	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	406	408	first strand
Strand 2	G	396	398	anti-parallel
Strand 3	G	439	440	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	460	464	first strand
Strand 2	G	469	473	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	551	555	first strand
Strand 2	G	558	565	anti-parallel
Strand 3	H	573	580	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	573	580	first strand
Strand 2	F	558	565	parallel
Strand 3	F	551	555	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	53	first strand
Strand 2	F	87	91	anti-parallel
Strand 3	F	36	40	parallel
Strand 4	F	334	337	parallel
Strand 5	F	363	367	parallel
Strand 6	F	389	392	parallel
Strand 7	F	457	458	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	102	first strand
Strand 2	F	105	109	anti-parallel
Strand 3	F	265	269	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	150	first strand
Strand 2	F	131	138	anti-parallel
Strand 3	F	120	126	anti-parallel
Strand 4	F	303	307	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	216	220	first strand
Strand 2	F	154	158	anti-parallel
Strand 3	F	246	248	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	194	first strand
Strand 2	F	178	185	anti-parallel
Strand 3	F	165	171	anti-parallel
Strand 4	F	236	240	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	406	408	first strand
Strand 2	F	396	398	anti-parallel
Strand 3	F	439	440	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	460	464	first strand
Strand 2	F	469	473	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	573	580	first strand
Strand 2	E	558	565	parallel
Strand 3	E	551	555	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	53	first strand
Strand 2	H	87	91	anti-parallel
Strand 3	H	36	40	parallel
Strand 4	H	334	337	parallel
Strand 5	H	363	367	parallel
Strand 6	H	389	392	parallel
Strand 7	H	457	458	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	102	first strand
Strand 2	H	105	109	anti-parallel
Strand 3	H	265	269	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	143	150	first strand
Strand 2	H	131	138	anti-parallel
Strand 3	H	120	126	anti-parallel
Strand 4	H	303	307	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	216	220	first strand
Strand 2	H	154	158	anti-parallel
Strand 3	H	246	248	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	188	194	first strand
Strand 2	H	178	185	anti-parallel
Strand 3	H	165	171	anti-parallel
Strand 4	H	236	240	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	406	408	first strand
Strand 2	H	396	398	anti-parallel
Strand 3	H	439	440	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	460	464	first strand
Strand 2	H	469	473	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	551	555	first strand
Strand 2	H	558	562	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	53	first strand
Strand 2	E	87	91	anti-parallel
Strand 3	E	36	40	parallel
Strand 4	E	334	337	parallel
Strand 5	E	363	367	parallel
Strand 6	E	389	392	parallel
Strand 7	E	457	458	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	102	first strand
Strand 2	E	105	109	anti-parallel
Strand 3	E	265	269	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	150	first strand
Strand 2	E	131	138	anti-parallel
Strand 3	E	120	126	anti-parallel
Strand 4	E	303	307	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	220	first strand
Strand 2	E	154	158	anti-parallel
Strand 3	E	246	248	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	194	first strand
Strand 2	E	178	185	anti-parallel
Strand 3	E	165	171	anti-parallel
Strand 4	E	236	240	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	406	408	first strand
Strand 2	E	396	398	anti-parallel
Strand 3	E	439	440	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	460	464	first strand
Strand 2	E	469	473	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	15	19	anti-parallel
Strand 3	D	91	97	anti-parallel
Strand 4	D	103	118	anti-parallel
Strand 5	D	126	137	anti-parallel
Strand 6	D	58	66	anti-parallel
Strand 7	D	27	35	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	43	first strand
Strand 2	D	46	54	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	15	19	anti-parallel
Strand 3	C	91	97	anti-parallel
Strand 4	C	103	118	anti-parallel
Strand 5	C	126	137	anti-parallel
Strand 6	C	58	66	anti-parallel
Strand 7	C	27	35	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	43	first strand
Strand 2	C	46	54	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	15	19	anti-parallel
Strand 3	B	91	97	anti-parallel
Strand 4	B	103	118	anti-parallel
Strand 5	B	126	137	anti-parallel
Strand 6	B	58	66	anti-parallel
Strand 7	B	27	35	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	43	first strand
Strand 2	B	46	54	anti-parallel

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There are 7 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	15	19	anti-parallel
Strand 3	A	91	97	anti-parallel
Strand 4	A	103	118	anti-parallel
Strand 5	A	126	137	anti-parallel
Strand 6	A	58	66	anti-parallel
Strand 7	A	27	35	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	43	first strand
Strand 2	A	46	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F04

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F04