Analysis of interatomic Contacts of Structural Units in PDB entry:
9F0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F0J entry

There are 3 chains in PDB entry 9F0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 307LEU 1020
X
 U 1 G 15
Z
 C 1 A 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9F0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
310 318Right-handed alpha
Helix 2
AA2
A
319 323Right-handed 310
Helix 3
AA3
A
335 355Right-handed alpha
Helix 4
AA4
A
366 377Right-handed alpha
Helix 5
AA5
A
377 383Right-handed alpha
Helix 6
AA6
A
400 407Right-handed alpha
Helix 7
AA7
A
415 427Right-handed alpha
Helix 8
AA8
A
445 449Right-handed 310
Helix 9
AA9
A
453 476Right-handed alpha
Helix 10
AB1
A
499 515Right-handed alpha
Helix 11
AB2
A
526 533Right-handed alpha
Helix 12
AB3
A
550 567Right-handed alpha
Helix 13
AB4
A
576 594Right-handed alpha
Helix 14
AB5
A
598 618Right-handed alpha
Helix 15
AB6
A
619 643Right-handed alpha
Helix 16
AB7
A
670 692Right-handed alpha
Helix 17
AB8
A
700 712Right-handed alpha
Helix 18
AB9
A
727 741Right-handed alpha
Helix 19
AC1
A
742 748Right-handed alpha
Helix 20
AC2
A
767 781Right-handed alpha
Helix 21
AC3
A
790 794Right-handed 310
Helix 22
AC4
A
843 863Right-handed alpha
Helix 23
AC5
A
865 895Right-handed alpha
Helix 24
AC6
A
932 937Right-handed alpha
Helix 25
AC7
A
1002 1006Right-handed 310
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There are 5 sheets in PDB entry 9F0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 329first strand
Strand 2
A
484 489parallel
Strand 3
A
440 443parallel
Strand 4
A
360 364parallel
Strand 5
A
410 414parallel
Strand 6
A
388 390parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 754first strand
Strand 2
A
785 788parallel
Strand 3
A
721 724parallel
Strand 4
A
803 807parallel
Strand 5
A
829 833parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
913 916first strand
Strand 2
A
903 907anti-parallel
Strand 3
A
987 991anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 923first strand
Strand 2
A
927 930anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
940 942first strand
Strand 2
A
959 961anti-parallel
Strand 3
A
967 974anti-parallel
Strand 4
A
977 982anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il