Analysis of interatomic Contacts of Structural Units in PDB entry:
9F0K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F0K entry

There are 3 chains in PDB entry 9F0K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 68	TYR 286
B	TYR 32	ILE 335
C	GLY 1	GLN 233

There are 15 helices in PDB entry 9F0K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	82	Right-handed alpha
Helix 2	AA2	A	115	123	Right-handed alpha
Helix 3	AA3	A	172	176	Right-handed 310
Helix 4	AA4	B	57	62	Right-handed alpha
Helix 5	AA5	B	96	100	Right-handed 310
Helix 6	AA6	B	104	106	Right-handed 310
Helix 7	AA7	B	127	131	Right-handed 310
Helix 8	AA8	B	152	156	Right-handed 310
Helix 9	AA9	B	158	167	Right-handed alpha
Helix 10	AB1	B	213	218	Right-handed alpha
Helix 11	AB2	B	219	223	Right-handed 310
Helix 12	AB3	B	256	262	Right-handed 310
Helix 13	AB4	C	65	69	Right-handed 310
Helix 14	AB5	C	98	105	Right-handed alpha
Helix 15	AB6	C	144	150	Right-handed alpha

There are 10 sheets in PDB entry 9F0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	94	first strand
Strand 2	A	253	269	anti-parallel
Strand 3	A	127	142	anti-parallel
Strand 4	A	205	206	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	127	142	anti-parallel
Strand 3	A	253	269	anti-parallel
Strand 4	C	39	40	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	154	160	anti-parallel
Strand 4	A	182	186	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	274	279	parallel
Strand 3	B	170	181	anti-parallel
Strand 4	B	316	330	anti-parallel
Strand 5	B	133	134	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	274	279	parallel
Strand 3	B	170	181	anti-parallel
Strand 4	B	316	330	anti-parallel
Strand 5	B	138	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	151	first strand
Strand 2	B	296	308	anti-parallel
Strand 3	B	187	197	anti-parallel
Strand 4	B	264	268	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	208	216	anti-parallel
Strand 3	C	70	72	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	208	216	anti-parallel
Strand 3	C	114	120	anti-parallel
Strand 4	C	163	168	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	C	189	194	anti-parallel
Strand 3	C	128	135	anti-parallel
Strand 4	C	152	158	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	109	111	anti-parallel
Strand 3	C	221	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F0K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F0K