Analysis of interatomic Contacts of Structural Units in PDB entry:
9F0X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F0X entry

There are 8 chains in PDB entry 9F0X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	T 94	T 12
B	A 12	A 94
C	ALA 2	LYS 97
D	MET 1	GLY 94
E	MET 1	ASN 113
F	MET 1	ALA 120
G	LYS 12	ARG 118
H	ARG 566	THR 834

There are 27 helices in PDB entry 9F0X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	4	17	Right-handed alpha
Helix 2	AA2	C	19	40	Right-handed alpha
Helix 3	AA3	C	84	90	Right-handed alpha
Helix 4	AA4	D	2	14	Right-handed alpha
Helix 5	AA5	D	18	39	Right-handed alpha
Helix 6	AA6	D	83	91	Right-handed alpha
Helix 7	AA7	E	19	33	Right-handed alpha
Helix 8	AA8	E	36	52	Right-handed alpha
Helix 9	AA9	E	75	90	Right-handed alpha
Helix 10	AB1	E	92	108	Right-handed alpha
Helix 11	AB2	F	22	34	Right-handed alpha
Helix 12	AB3	F	36	52	Right-handed alpha
Helix 13	AB4	F	75	90	Right-handed alpha
Helix 14	AB5	F	92	108	Right-handed alpha
Helix 15	AB6	G	19	34	Right-handed alpha
Helix 16	AB7	G	36	52	Right-handed alpha
Helix 17	AB8	G	61	65	Right-handed 310
Helix 18	AB9	G	75	90	Right-handed alpha
Helix 19	AC1	G	92	108	Right-handed alpha
Helix 20	AC2	H	577	594	Right-handed alpha
Helix 21	AC3	H	604	622	Right-handed alpha
Helix 22	AC4	H	646	650	Right-handed 310
Helix 23	AC5	H	696	698	Right-handed 310
Helix 24	AC6	H	763	767	Right-handed 310
Helix 25	AC7	H	793	797	Right-handed 310
Helix 26	AC8	H	798	808	Right-handed alpha
Helix 27	AC9	H	821	825	Right-handed 310

There are 11 sheets in PDB entry 9F0X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	50	52	anti-parallel
Strand 3	C	82	83	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	57	first strand
Strand 2	C	76	79	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	72	73	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	49	55	anti-parallel
Strand 3	D	76	82	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	69	71	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	18	first strand
Strand 2	E	68	73	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	19	first strand
Strand 2	F	67	73	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	18	first strand
Strand 2	G	68	73	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	568	572	first strand
Strand 2	H	811	816	parallel
Strand 3	H	787	792	parallel
Strand 4	H	597	600	parallel
Strand 5	H	775	776	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	632	637	first strand
Strand 2	H	702	709	anti-parallel
Strand 3	H	655	658	anti-parallel
Strand 4	H	667	675	anti-parallel
Strand 5	H	680	685	anti-parallel
Strand 6	H	690	694	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	756	759	first strand
Strand 2	H	744	748	anti-parallel
Strand 3	H	734	740	anti-parallel
Strand 4	H	717	720	anti-parallel
Strand 5	H	770	772	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F0X

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F0X