Analysis of interatomic Contacts of Structural Units in PDB entry:
9F0Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F0Y entry

There are 8 chains in PDB entry 9F0Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	T 93	G -2
B	G 10	A 93
C	ALA 2	PRO 96
D	MET 1	GLY 94
F	MET 1	ARG 118
E	MET 1	ASN 113
G	LYS 12	GLU 119
H	MET 1	THR 834

There are 38 helices in PDB entry 9F0Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	4	17	Right-handed alpha
Helix 2	AA2	C	19	40	Right-handed alpha
Helix 3	AA3	C	84	92	Right-handed alpha
Helix 4	AA4	D	2	14	Right-handed alpha
Helix 5	AA5	D	18	40	Right-handed alpha
Helix 6	AA6	D	83	91	Right-handed alpha
Helix 7	AA7	F	20	34	Right-handed alpha
Helix 8	AA8	F	36	52	Right-handed alpha
Helix 9	AA9	F	75	90	Right-handed alpha
Helix 10	AB1	F	92	108	Right-handed alpha
Helix 11	AB2	E	20	34	Right-handed alpha
Helix 12	AB3	E	36	52	Right-handed alpha
Helix 13	AB4	E	75	90	Right-handed alpha
Helix 14	AB5	E	92	108	Right-handed alpha
Helix 15	AB6	G	20	34	Right-handed alpha
Helix 16	AB7	G	36	52	Right-handed alpha
Helix 17	AB8	G	75	90	Right-handed alpha
Helix 18	AB9	G	92	108	Right-handed alpha
Helix 19	AC1	H	9	18	Right-handed alpha
Helix 20	AC2	H	35	41	Right-handed alpha
Helix 21	AC3	H	48	58	Right-handed alpha
Helix 22	AC4	H	87	98	Right-handed alpha
Helix 23	AC5	H	99	118	Right-handed alpha
Helix 24	AC6	H	184	192	Right-handed alpha
Helix 25	AC7	H	192	211	Right-handed alpha
Helix 26	AC8	H	219	222	Right-handed 310
Helix 27	AC9	H	230	234	Right-handed 310
Helix 28	AD1	H	235	245	Right-handed alpha
Helix 29	AD2	H	252	261	Right-handed alpha
Helix 30	AD3	H	269	283	Right-handed alpha
Helix 31	AD4	H	288	303	Right-handed alpha
Helix 32	AD5	H	575	593	Right-handed alpha
Helix 33	AD6	H	603	621	Right-handed alpha
Helix 34	AD7	H	646	650	Right-handed 310
Helix 35	AD8	H	696	698	Right-handed 310
Helix 36	AD9	H	763	767	Right-handed 310
Helix 37	AE1	H	798	809	Right-handed alpha
Helix 38	AE2	H	822	829	Right-handed 310

There are 16 sheets in PDB entry 9F0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	50	57	anti-parallel
Strand 3	C	76	83	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	49	56	anti-parallel
Strand 3	D	75	82	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	69	72	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	19	first strand
Strand 2	F	67	73	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	19	first strand
Strand 2	E	67	73	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	19	first strand
Strand 2	G	67	72	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	6	first strand
Strand 2	H	79	85	anti-parallel
Strand 3	H	154	163	anti-parallel
Strand 4	H	140	148	anti-parallel
Strand 5	H	32	34	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	69	70	first strand
Strand 2	H	73	74	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	131	135	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	167	first strand
Strand 2	H	172	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	216	217	first strand
Strand 2	H	224	225	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	567	568	first strand
Strand 2	H	832	833	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	571	572	first strand
Strand 2	H	815	816	parallel
Strand 3	H	787	792	parallel
Strand 4	H	597	600	parallel
Strand 5	H	775	776	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	571	572	first strand
Strand 2	H	815	816	parallel
Strand 3	H	787	792	parallel
Strand 4	H	811	812	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	629	637	first strand
Strand 2	H	702	712	anti-parallel
Strand 3	H	655	660	anti-parallel
Strand 4	H	665	675	anti-parallel
Strand 5	H	680	684	anti-parallel
Strand 6	H	690	694	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	756	759	first strand
Strand 2	H	744	748	anti-parallel
Strand 3	H	734	740	anti-parallel
Strand 4	H	717	720	anti-parallel
Strand 5	H	770	772	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F0Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F0Y