Analysis of interatomic Contacts of Structural Units in PDB entry:
9F0Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F0Z entry

There are 8 chains in PDB entry 9F0Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	T 94	G -2
B	G 10	A 94
C	ALA 2	PRO 96
D	MET 1	GLY 94
F	MET 1	ALA 120
G	GLY 11	GLU 119
E	MET 1	ASN 113
H	MET 1	THR 834

There are 41 helices in PDB entry 9F0Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	4	17	Right-handed alpha
Helix 2	AA2	C	19	40	Right-handed alpha
Helix 3	AA3	C	84	92	Right-handed alpha
Helix 4	AA4	D	2	14	Right-handed alpha
Helix 5	AA5	D	18	39	Right-handed alpha
Helix 6	AA6	D	83	91	Right-handed alpha
Helix 7	AA7	F	20	34	Right-handed alpha
Helix 8	AA8	F	36	52	Right-handed alpha
Helix 9	AA9	F	75	90	Right-handed alpha
Helix 10	AB1	F	92	108	Right-handed alpha
Helix 11	AB2	G	20	34	Right-handed alpha
Helix 12	AB3	G	36	52	Right-handed alpha
Helix 13	AB4	G	61	65	Right-handed 310
Helix 14	AB5	G	75	86	Right-handed alpha
Helix 15	AB6	G	92	106	Right-handed alpha
Helix 16	AB7	E	20	34	Right-handed alpha
Helix 17	AB8	E	36	52	Right-handed alpha
Helix 18	AB9	E	75	90	Right-handed alpha
Helix 19	AC1	E	92	108	Right-handed alpha
Helix 20	AC2	H	9	19	Right-handed alpha
Helix 21	AC3	H	37	42	Right-handed 310
Helix 22	AC4	H	48	58	Right-handed alpha
Helix 23	AC5	H	87	95	Right-handed alpha
Helix 24	AC6	H	104	111	Right-handed alpha
Helix 25	AC7	H	184	192	Right-handed alpha
Helix 26	AC8	H	192	212	Right-handed alpha
Helix 27	AC9	H	219	222	Right-handed 310
Helix 28	AD1	H	228	232	Right-handed 310
Helix 29	AD2	H	235	246	Right-handed alpha
Helix 30	AD3	H	251	252	Right-handed 310
Helix 31	AD4	H	254	254	Right-handed 310
Helix 32	AD5	H	255	262	Right-handed alpha
Helix 33	AD6	H	269	281	Right-handed alpha
Helix 34	AD7	H	291	296	Right-handed alpha
Helix 35	AD8	H	575	593	Right-handed alpha
Helix 36	AD9	H	603	622	Right-handed alpha
Helix 37	AE1	H	646	650	Right-handed 310
Helix 38	AE2	H	696	698	Right-handed 310
Helix 39	AE3	H	763	767	Right-handed 310
Helix 40	AE4	H	798	808	Right-handed alpha
Helix 41	AE5	H	822	828	Right-handed 310

There are 12 sheets in PDB entry 9F0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	50	56	anti-parallel
Strand 3	C	77	83	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	49	56	anti-parallel
Strand 3	D	75	82	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	19	first strand
Strand 2	F	67	73	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	19	first strand
Strand 2	G	67	73	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	19	first strand
Strand 2	E	67	73	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	79	84	anti-parallel
Strand 3	H	154	163	anti-parallel
Strand 4	H	141	148	anti-parallel
Strand 5	H	32	34	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	69	70	first strand
Strand 2	H	73	74	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	124	first strand
Strand 2	H	133	134	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	216	217	first strand
Strand 2	H	224	225	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	568	572	first strand
Strand 2	H	811	816	parallel
Strand 3	H	787	792	parallel
Strand 4	H	597	600	parallel
Strand 5	H	775	776	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	629	636	first strand
Strand 2	H	702	712	anti-parallel
Strand 3	H	655	660	anti-parallel
Strand 4	H	665	675	anti-parallel
Strand 5	H	680	685	anti-parallel
Strand 6	H	690	694	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	756	759	first strand
Strand 2	H	744	748	anti-parallel
Strand 3	H	734	740	anti-parallel
Strand 4	H	717	720	anti-parallel
Strand 5	H	770	772	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F0Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F0Z