Analysis of interatomic Contacts of Structural Units in PDB entry:
9F16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F16 entry

There are 7 chains in PDB entry 9F16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 37	GLY 331
B	ALA 16	GLY 523
C	ALA 16	MET 570
D	GLY 42	LEU 324
E	ALA 16	ALA 804
F	ALA 16	ALA 804
G	GLY 39	VAL 327

There are113 helices in PDB entry 9F16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	50	Right-handed alpha
Helix 2	AA2	A	104	119	Right-handed alpha
Helix 3	AA3	A	121	126	Right-handed alpha
Helix 4	AA4	A	126	137	Right-handed alpha
Helix 5	AA5	A	277	285	Right-handed alpha
Helix 6	AA6	A	311	331	Right-handed alpha
Helix 7	AA7	B	22	50	Right-handed alpha
Helix 8	AA8	B	104	119	Right-handed alpha
Helix 9	AA9	B	121	148	Right-handed alpha
Helix 10	AB1	B	148	167	Right-handed alpha
Helix 11	AB2	B	168	176	Right-handed alpha
Helix 12	AB3	B	237	253	Right-handed alpha
Helix 13	AB4	B	256	284	Right-handed alpha
Helix 14	AB5	B	311	343	Right-handed alpha
Helix 15	AB6	B	353	358	Right-handed alpha
Helix 16	AB7	B	367	381	Right-handed alpha
Helix 17	AB8	B	381	390	Right-handed alpha
Helix 18	AB9	B	393	409	Right-handed alpha
Helix 19	AC1	B	410	418	Right-handed alpha
Helix 20	AC2	B	438	443	Right-handed 310
Helix 21	AC3	B	460	466	Right-handed 310
Helix 22	AC4	B	482	493	Right-handed alpha
Helix 23	AC5	B	508	512	Right-handed 310
Helix 24	AC6	C	22	49	Right-handed alpha
Helix 25	AC7	C	104	119	Right-handed alpha
Helix 26	AC8	C	121	148	Right-handed alpha
Helix 27	AC9	C	148	167	Right-handed alpha
Helix 28	AD1	C	168	176	Right-handed alpha
Helix 29	AD2	C	238	254	Right-handed alpha
Helix 30	AD3	C	257	284	Right-handed alpha
Helix 31	AD4	C	312	342	Right-handed alpha
Helix 32	AD5	C	353	358	Right-handed alpha
Helix 33	AD6	C	367	381	Right-handed alpha
Helix 34	AD7	C	381	389	Right-handed alpha
Helix 35	AD8	C	390	392	Right-handed 310
Helix 36	AD9	C	393	409	Right-handed alpha
Helix 37	AE1	C	410	418	Right-handed alpha
Helix 38	AE2	C	437	443	Right-handed 310
Helix 39	AE3	C	460	466	Right-handed 310
Helix 40	AE4	C	482	493	Right-handed alpha
Helix 41	AE5	C	507	512	Right-handed 310
Helix 42	AE6	C	557	559	Right-handed 310
Helix 43	AE7	C	560	565	Right-handed alpha
Helix 44	AE8	D	43	50	Right-handed alpha
Helix 45	AE9	D	104	119	Right-handed alpha
Helix 46	AF1	D	121	135	Right-handed alpha
Helix 47	AF2	D	277	287	Right-handed alpha
Helix 48	AF3	D	312	324	Right-handed alpha
Helix 49	AF4	E	17	21	Right-handed 310
Helix 50	AF5	E	22	49	Right-handed alpha
Helix 51	AF6	E	104	119	Right-handed alpha
Helix 52	AF7	E	121	148	Right-handed alpha
Helix 53	AF8	E	148	168	Right-handed alpha
Helix 54	AF9	E	168	176	Right-handed alpha
Helix 55	AG1	E	238	253	Right-handed alpha
Helix 56	AG2	E	256	284	Right-handed alpha
Helix 57	AG3	E	311	342	Right-handed alpha
Helix 58	AG4	E	353	358	Right-handed alpha
Helix 59	AG5	E	367	381	Right-handed alpha
Helix 60	AG6	E	381	391	Right-handed alpha
Helix 61	AG7	E	393	409	Right-handed alpha
Helix 62	AG8	E	410	418	Right-handed alpha
Helix 63	AG9	E	439	443	Right-handed 310
Helix 64	AH1	E	460	466	Right-handed 310
Helix 65	AH2	E	482	493	Right-handed alpha
Helix 66	AH3	E	507	513	Right-handed 310
Helix 67	AH4	E	558	565	Right-handed alpha
Helix 68	AH5	E	584	588	Right-handed 310
Helix 69	AH6	E	605	611	Right-handed 310
Helix 70	AH7	E	629	634	Right-handed alpha
Helix 71	AH8	E	653	659	Right-handed 310
Helix 72	AH9	E	676	682	Right-handed 310
Helix 73	AI1	E	699	704	Right-handed 310
Helix 74	AI2	E	722	728	Right-handed 310
Helix 75	AI3	E	745	751	Right-handed 310
Helix 76	AI4	E	768	773	Right-handed 310
Helix 77	AI5	E	785	791	Right-handed alpha
Helix 78	AI6	E	793	802	Right-handed alpha
Helix 79	AI7	F	22	50	Right-handed alpha
Helix 80	AI8	F	104	119	Right-handed alpha
Helix 81	AI9	F	121	148	Right-handed alpha
Helix 82	AJ1	F	148	168	Right-handed alpha
Helix 83	AJ2	F	168	176	Right-handed alpha
Helix 84	AJ3	F	237	253	Right-handed alpha
Helix 85	AJ4	F	256	284	Right-handed alpha
Helix 86	AJ5	F	285	287	Right-handed 310
Helix 87	AJ6	F	312	342	Right-handed alpha
Helix 88	AJ7	F	353	358	Right-handed alpha
Helix 89	AJ8	F	367	381	Right-handed alpha
Helix 90	AJ9	F	381	390	Right-handed alpha
Helix 91	AK1	F	393	409	Right-handed alpha
Helix 92	AK2	F	410	418	Right-handed alpha
Helix 93	AK3	F	437	443	Right-handed 310
Helix 94	AK4	F	460	466	Right-handed 310
Helix 95	AK5	F	482	493	Right-handed alpha
Helix 96	AK6	F	507	513	Right-handed 310
Helix 97	AK7	F	558	563	Right-handed 310
Helix 98	AK8	F	583	588	Right-handed 310
Helix 99	AK9	F	605	611	Right-handed 310
Helix 100	AL1	F	629	634	Right-handed alpha
Helix 101	AL2	F	654	659	Right-handed 310
Helix 102	AL3	F	676	682	Right-handed 310
Helix 103	AL4	F	699	705	Right-handed 310
Helix 104	AL5	F	722	728	Right-handed 310
Helix 105	AL6	F	745	749	Right-handed 310
Helix 106	AL7	F	768	774	Right-handed 310
Helix 107	AL8	F	785	792	Right-handed alpha
Helix 108	AL9	F	793	802	Right-handed alpha
Helix 109	AM1	G	40	49	Right-handed alpha
Helix 110	AM2	G	104	119	Right-handed alpha
Helix 111	AM3	G	121	136	Right-handed alpha
Helix 112	AM4	G	276	287	Right-handed alpha
Helix 113	AM5	G	312	327	Right-handed alpha

There are 16 sheets in PDB entry 9F16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	56	first strand
Strand 2	A	305	310	anti-parallel
Strand 3	A	290	294	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	305	310	anti-parallel
Strand 3	B	290	294	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	420	first strand
Strand 2	B	426	430	anti-parallel
Strand 3	B	448	459	parallel
Strand 4	B	473	481	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	499	first strand
Strand 2	B	518	522	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	305	310	anti-parallel
Strand 3	C	290	294	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	420	first strand
Strand 2	C	426	430	anti-parallel
Strand 3	C	448	452	parallel
Strand 4	C	473	475	parallel
Strand 5	C	495	499	parallel
Strand 6	C	518	522	parallel
Strand 7	C	546	548	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	459	first strand
Strand 2	C	479	481	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	56	first strand
Strand 2	D	305	310	anti-parallel
Strand 3	D	290	294	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	56	first strand
Strand 2	E	305	310	anti-parallel
Strand 3	E	290	294	anti-parallel

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There are 17 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	419	420	first strand
Strand 2	E	426	430	anti-parallel
Strand 3	E	448	452	parallel
Strand 4	E	471	475	parallel
Strand 5	E	495	499	parallel
Strand 6	E	518	522	parallel
Strand 7	E	546	550	parallel
Strand 8	E	569	572	parallel
Strand 9	E	593	596	parallel
Strand 10	E	616	618	parallel
Strand 11	E	641	643	parallel
Strand 12	E	664	666	parallel
Strand 13	E	687	689	parallel
Strand 14	E	710	712	parallel
Strand 15	E	733	735	parallel
Strand 16	E	756	758	parallel
Strand 17	E	782	783	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	457	459	first strand
Strand 2	E	479	481	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	56	first strand
Strand 2	F	305	310	anti-parallel
Strand 3	F	290	294	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	420	first strand
Strand 2	F	426	427	anti-parallel

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There are 15 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	450	452	first strand
Strand 2	F	471	475	parallel
Strand 3	F	495	499	parallel
Strand 4	F	518	522	parallel
Strand 5	F	546	550	parallel
Strand 6	F	569	573	parallel
Strand 7	F	596	597	parallel
Strand 8	F	616	620	parallel
Strand 9	F	641	643	parallel
Strand 10	F	664	666	parallel
Strand 11	F	687	689	parallel
Strand 12	F	710	712	parallel
Strand 13	F	733	735	parallel
Strand 14	F	756	758	parallel
Strand 15	F	782	783	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	457	458	first strand
Strand 2	F	479	480	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	56	first strand
Strand 2	G	305	310	anti-parallel
Strand 3	G	290	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F16

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F16