Analysis of interatomic Contacts of Structural Units in PDB entry:
9F17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F17 entry

There are 2 chains in PDB entry 9F17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 411
B
 SER -1LEU 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9F17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
24 26Right-handed 310
Helix 3
AA3
A
74 83Right-handed alpha
Helix 4
AA4
A
102 117Right-handed alpha
Helix 5
AA5
A
124 134Right-handed alpha
Helix 6
AA6
A
139 144Right-handed 310
Helix 7
AA7
A
145 161Right-handed alpha
Helix 8
AA8
A
162 164Right-handed 310
Helix 9
AA9
A
172 189Right-handed alpha
Helix 10
AB1
A
194 205Right-handed alpha
Helix 11
AB2
A
216 220Right-handed 310
Helix 12
AB3
A
237 242Right-handed alpha
Helix 13
AB4
A
246 248Right-handed 310
Helix 14
AB5
A
275 286Right-handed alpha
Helix 15
AB6
A
303 314Right-handed alpha
Helix 16
AB7
A
322 327Right-handed 310
Helix 17
AB8
A
373 377Right-handed 310
Helix 18
AB9
A
378 393Right-handed alpha
Helix 19
AC1
B
14 23Right-handed alpha
Helix 20
AC2
B
24 26Right-handed 310
Helix 21
AC3
B
74 83Right-handed alpha
Helix 22
AC4
B
102 117Right-handed alpha
Helix 23
AC5
B
124 134Right-handed alpha
Helix 24
AC6
B
139 144Right-handed 310
Helix 25
AC7
B
145 160Right-handed alpha
Helix 26
AC8
B
161 164Right-handed 310
Helix 27
AC9
B
172 189Right-handed alpha
Helix 28
AD1
B
194 205Right-handed alpha
Helix 29
AD2
B
216 220Right-handed 310
Helix 30
AD3
B
235 241Right-handed 310
Helix 31
AD4
B
246 248Right-handed 310
Helix 32
AD5
B
275 285Right-handed alpha
Helix 33
AD6
B
303 314Right-handed alpha
Helix 34
AD7
B
322 327Right-handed 310
Helix 35
AD8
B
373 377Right-handed 310
Helix 36
AD9
B
378 393Right-handed alpha
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There are 10 sheets in PDB entry 9F17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
64 73parallel
Strand 3
A
92 95parallel
Strand 4
A
192 193parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
64 73parallel
Strand 3
A
28 34parallel
Strand 4
A
209 212parallel
Strand 5
A
2 7parallel
Strand 6
A
250 258parallel
Strand 7
A
317 321parallel
Strand 8
A
396 400parallel
Strand 9
A
408 410anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
47 51anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
297 302anti-parallel
Strand 3
A
331 340parallel
Strand 4
A
343 345anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
297 302anti-parallel
Strand 3
A
331 340parallel
Strand 4
A
356 363anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
92 95parallel
Strand 3
B
64 67parallel
Strand 4
B
28 31parallel
Strand 5
B
209 212parallel
Strand 6
B
2 7parallel
Strand 7
B
250 258parallel
Strand 8
B
317 321parallel
Strand 9
B
396 400parallel
Strand 10
B
408 410anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
47 51anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
99 100parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 263first strand
Strand 2
B
297 302anti-parallel
Strand 3
B
331 340parallel
Strand 4
B
343 345anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 263first strand
Strand 2
B
297 302anti-parallel
Strand 3
B
331 340parallel
Strand 4
B
355 363anti-parallel
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