Analysis of interatomic Contacts of Structural Units in PDB entry:
9F1R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F1R entry

There are 2 chains in PDB entry 9F1R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 92	ARG 678
B	ASN 875	LEU 1296

There are 29 helices in PDB entry 9F1R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	103	Right-handed alpha
Helix 2	AA2	A	105	131	Right-handed alpha
Helix 3	AA3	A	152	168	Right-handed alpha
Helix 4	AA4	A	168	173	Right-handed alpha
Helix 5	AA5	A	174	194	Right-handed alpha
Helix 6	AA6	A	197	213	Right-handed alpha
Helix 7	AA7	A	215	225	Right-handed alpha
Helix 8	AA8	A	229	231	Right-handed 310
Helix 9	AA9	A	232	258	Right-handed alpha
Helix 10	AB1	A	274	283	Right-handed alpha
Helix 11	AB2	A	284	294	Right-handed alpha
Helix 12	AB3	A	300	308	Right-handed alpha
Helix 13	AB4	A	309	329	Right-handed alpha
Helix 14	AB5	A	371	381	Right-handed alpha
Helix 15	AB6	A	387	426	Right-handed alpha
Helix 16	AB7	A	505	507	Right-handed 310
Helix 17	AB8	A	538	548	Right-handed alpha
Helix 18	AB9	A	548	558	Right-handed alpha
Helix 19	AC1	A	566	581	Right-handed alpha
Helix 20	AC2	A	582	586	Right-handed 310
Helix 21	AC3	A	588	603	Right-handed alpha
Helix 22	AC4	A	604	617	Right-handed alpha
Helix 23	AC5	A	622	648	Right-handed alpha
Helix 24	AC6	A	653	671	Right-handed alpha
Helix 25	AC7	B	929	933	Right-handed 310
Helix 26	AC8	B	954	958	Right-handed 310
Helix 27	AC9	B	1080	1093	Right-handed alpha
Helix 28	AD1	B	1266	1271	Right-handed alpha
Helix 29	AD2	B	1272	1274	Right-handed 310

There are 13 sheets in PDB entry 9F1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	431	first strand
Strand 2	A	444	450	parallel
Strand 3	A	463	470	parallel
Strand 4	A	483	485	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	431	first strand
Strand 2	A	444	450	parallel
Strand 3	A	463	470	parallel
Strand 4	A	488	490	parallel
Strand 5	A	509	510	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	436	first strand
Strand 2	A	453	455	parallel
Strand 3	A	473	475	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	440	first strand
Strand 2	A	458	460	parallel
Strand 3	A	478	480	parallel
Strand 4	A	498	500	parallel
Strand 5	A	517	519	parallel
Strand 6	B	1142	1145	anti-parallel
Strand 7	B	1149	1151	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	495	first strand
Strand 2	A	513	515	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	888	890	first strand
Strand 2	B	879	883	anti-parallel
Strand 3	B	1067	1075	anti-parallel
Strand 4	B	914	916	anti-parallel
Strand 5	B	905	906	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	888	890	first strand
Strand 2	B	879	883	anti-parallel
Strand 3	B	1067	1075	anti-parallel
Strand 4	B	941	948	anti-parallel
Strand 5	B	1015	1021	anti-parallel
Strand 6	B	1026	1031	anti-parallel
Strand 7	B	1034	1040	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	897	900	first strand
Strand 2	B	924	927	anti-parallel
Strand 3	B	1047	1058	anti-parallel
Strand 4	B	935	936	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	897	900	first strand
Strand 2	B	924	927	anti-parallel
Strand 3	B	1047	1058	anti-parallel
Strand 4	B	962	969	anti-parallel
Strand 5	B	972	979	anti-parallel
Strand 6	B	982	988	anti-parallel
Strand 7	B	994	1000	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1112	1115	first strand
Strand 2	B	1282	1285	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1122	1126	first strand
Strand 2	B	1133	1137	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1164	first strand
Strand 2	B	1178	1186	anti-parallel
Strand 3	B	1189	1194	anti-parallel
Strand 4	B	1207	1209	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1164	first strand
Strand 2	B	1178	1186	anti-parallel
Strand 3	B	1221	1224	anti-parallel
Strand 4	B	1236	1240	anti-parallel
Strand 5	B	1246	1253	anti-parallel
Strand 6	B	1260	1264	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F1R

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F1R