Analysis of interatomic Contacts of Structural Units in PDB entry:
9F1X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F1X entry

There is 1 chain in PDB entry 9F1X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0VAL 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9F1X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 34Right-handed alpha
Helix 2
AA2
A
54 67Right-handed alpha
Helix 3
AA3
A
98 100Right-handed 310
Helix 4
AA4
A
104 125Right-handed alpha
Helix 5
AA5
A
127 136Right-handed alpha
Helix 6
AA6
A
139 143Right-handed 310
Helix 7
AA7
A
159 167Right-handed alpha
Helix 8
AA8
A
168 190Right-handed alpha
Helix 9
AA9
A
210 232Right-handed alpha
Helix 10
AB1
A
236 241Right-handed 310
Helix 11
AB2
A
270 286Right-handed alpha
Helix 12
AB3
A
293 299Right-handed alpha
Helix 13
AB4
A
338 349Right-handed alpha
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There are 3 sheets in PDB entry 9F1X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 82first strand
Strand 2
A
1 10anti-parallel
Strand 3
A
45 53anti-parallel
Strand 4
A
36 42anti-parallel
Strand 5
A
93 96parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 198first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
146 157anti-parallel
Strand 4
A
243 258anti-parallel
Strand 5
A
263 267anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 198first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
146 157anti-parallel
Strand 4
A
243 258anti-parallel
Strand 5
A
289 292parallel
Strand 6
A
320 325anti-parallel
Strand 7
A
305 311anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il