Analysis of interatomic Contacts of Structural Units in PDB entry:
9F25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F25 entry

There is 1 chain in PDB entry 9F25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2TYR 869
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9F25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 101Right-handed alpha
Helix 2
AA2
A
101 114Right-handed alpha
Helix 3
AA3
A
130 132Right-handed 310
Helix 4
AA4
A
216 233Right-handed alpha
Helix 5
AA5
A
259 267Right-handed alpha
Helix 6
AA6
A
268 274Right-handed 310
Helix 7
AA7
A
275 300Right-handed alpha
Helix 8
AA8
A
309 322Right-handed alpha
Helix 9
AA9
A
334 347Right-handed alpha
Helix 10
AB1
A
350 359Right-handed alpha
Helix 11
AB2
A
409 413Right-handed 310
Helix 12
AB3
A
460 462Right-handed 310
Helix 13
AB4
A
496 505Right-handed alpha
Helix 14
AB5
A
549 556Right-handed alpha
Helix 15
AB6
A
571 578Right-handed alpha
Helix 16
AB7
A
587 596Right-handed alpha
Helix 17
AB8
A
602 619Right-handed alpha
Helix 18
AB9
A
636 641Right-handed alpha
Helix 19
AC1
A
648 660Right-handed alpha
Helix 20
AC2
A
661 663Right-handed 310
Helix 21
AC3
A
687 721Right-handed alpha
Helix 22
AC4
A
721 753Right-handed alpha
Helix 23
AC5
A
755 763Right-handed alpha
Helix 24
AC6
A
765 800Right-handed alpha
Helix 25
AC7
A
800 824Right-handed alpha
Helix 26
AC8
A
833 846Right-handed alpha
Helix 27
AC9
A
852 856Right-handed 310
Helix 28
AD1
A
859 868Right-handed alpha
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There are 7 sheets in PDB entry 9F25. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
42 48anti-parallel
Strand 6
A
151 155parallel
Strand 7
A
184 187parallel
Strand 8
A
165 166anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
302 304parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
372 375anti-parallel
Strand 4
A
414 415anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
331 332anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 458first strand
Strand 2
A
426 430anti-parallel
Strand 3
A
542 544parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 481first strand
Strand 2
A
679 681parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 569first strand
Strand 2
A
581 583parallel
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