Analysis of interatomic Contacts of Structural Units in PDB entry:
9F29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F29 entry

There are 3 chains in PDB entry 9F29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 206	LEU 267
A	GLU 166	CYS 619
B	MET 1	ARG 1216

There are 66 helices in PDB entry 9F29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	206	223	Right-handed alpha
Helix 2	AA2	C	228	236	Right-handed alpha
Helix 3	AA3	C	240	255	Right-handed alpha
Helix 4	AA4	A	202	206	Right-handed 310
Helix 5	AA5	A	219	244	Right-handed alpha
Helix 6	AA6	A	254	261	Right-handed 310
Helix 7	AA7	A	369	381	Right-handed alpha
Helix 8	AA8	A	386	394	Right-handed alpha
Helix 9	AA9	A	415	419	Right-handed 310
Helix 10	AB1	A	423	435	Right-handed alpha
Helix 11	AB2	A	468	472	Right-handed 310
Helix 12	AB3	A	500	508	Right-handed alpha
Helix 13	AB4	A	516	527	Right-handed alpha
Helix 14	AB5	A	584	591	Right-handed alpha
Helix 15	AB6	B	5	30	Right-handed alpha
Helix 16	AB7	B	46	55	Right-handed alpha
Helix 17	AB8	B	59	71	Right-handed alpha
Helix 18	AB9	B	72	87	Right-handed alpha
Helix 19	AC1	B	94	112	Right-handed alpha
Helix 20	AC2	B	116	121	Right-handed alpha
Helix 21	AC3	B	145	150	Right-handed 310
Helix 22	AC4	B	151	170	Right-handed alpha
Helix 23	AC5	B	177	195	Right-handed alpha
Helix 24	AC6	B	203	212	Right-handed alpha
Helix 25	AC7	B	242	252	Right-handed alpha
Helix 26	AC8	B	256	268	Right-handed alpha
Helix 27	AC9	B	272	283	Right-handed alpha
Helix 28	AD1	B	311	324	Right-handed alpha
Helix 29	AD2	B	368	374	Right-handed alpha
Helix 30	AD3	B	419	427	Right-handed alpha
Helix 31	AD4	B	442	450	Right-handed alpha
Helix 32	AD5	B	459	476	Right-handed alpha
Helix 33	AD6	B	486	498	Right-handed alpha
Helix 34	AD7	B	500	510	Right-handed alpha
Helix 35	AD8	B	517	529	Right-handed alpha
Helix 36	AD9	B	533	537	Right-handed 310
Helix 37	AE1	B	539	543	Right-handed 310
Helix 38	AE2	B	544	558	Right-handed alpha
Helix 39	AE3	B	579	583	Right-handed alpha
Helix 40	AE4	B	585	592	Right-handed alpha
Helix 41	AE5	B	606	615	Right-handed alpha
Helix 42	AE6	B	631	639	Right-handed alpha
Helix 43	AE7	B	686	694	Right-handed alpha
Helix 44	AE8	B	740	746	Right-handed alpha
Helix 45	AE9	B	766	779	Right-handed alpha
Helix 46	AF1	B	801	812	Right-handed alpha
Helix 47	AF2	B	841	849	Right-handed alpha
Helix 48	AF3	B	877	897	Right-handed alpha
Helix 49	AF4	B	908	913	Right-handed 310
Helix 50	AF5	B	944	950	Right-handed alpha
Helix 51	AF6	B	965	972	Right-handed alpha
Helix 52	AF7	B	973	977	Right-handed 310
Helix 53	AF8	B	996	1000	Right-handed 310
Helix 54	AF9	B	1003	1007	Right-handed 310
Helix 55	AG1	B	1014	1022	Right-handed alpha
Helix 56	AG2	B	1026	1030	Right-handed 310
Helix 57	AG3	B	1036	1041	Right-handed 310
Helix 58	AG4	B	1043	1047	Right-handed 310
Helix 59	AG5	B	1066	1071	Right-handed 310
Helix 60	AG6	B	1073	1088	Right-handed alpha
Helix 61	AG7	B	1092	1104	Right-handed alpha
Helix 62	AG8	B	1105	1117	Right-handed alpha
Helix 63	AG9	B	1151	1156	Right-handed 310
Helix 64	AH1	B	1158	1169	Right-handed alpha
Helix 65	AH2	B	1172	1190	Right-handed alpha
Helix 66	AH3	B	1207	1216	Right-handed alpha

There are 14 sheets in PDB entry 9F29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	264	265	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	201	first strand
Strand 2	A	484	488	anti-parallel
Strand 3	A	491	495	anti-parallel
Strand 4	A	555	558	parallel
Strand 5	A	572	576	parallel
Strand 6	A	565	569	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	278	first strand
Strand 2	A	282	288	anti-parallel
Strand 3	A	293	299	anti-parallel
Strand 4	A	329	335	parallel
Strand 5	A	317	322	anti-parallel
Strand 6	A	267	278	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	479	first strand
Strand 2	A	443	447	parallel
Strand 3	A	396	402	parallel
Strand 4	A	354	358	parallel
Strand 5	A	598	603	anti-parallel
Strand 6	A	608	614	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	990	992	parallel
Strand 3	B	926	936	parallel
Strand 4	B	916	920	anti-parallel
Strand 5	B	959	964	anti-parallel
Strand 6	B	823	829	anti-parallel
Strand 7	B	940	943	parallel
Strand 8	B	872	876	anti-parallel
Strand 9	B	926	936	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	129	first strand
Strand 2	B	137	143	anti-parallel
Strand 3	B	217	220	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	227	first strand
Strand 2	B	240	241	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	350	354	anti-parallel
Strand 3	B	437	441	parallel
Strand 4	B	364	367	anti-parallel
Strand 5	B	394	398	parallel
Strand 6	B	384	385	anti-parallel
Strand 7	B	656	657	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	406	409	anti-parallel
Strand 3	B	430	435	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	565	first strand
Strand 2	B	570	578	anti-parallel
Strand 3	B	602	605	anti-parallel
Strand 4	B	597	599	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	701	first strand
Strand 2	B	761	765	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	713	first strand
Strand 2	B	704	705	anti-parallel
Strand 3	B	726	729	anti-parallel
Strand 4	B	738	739	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	833	first strand
Strand 2	B	866	867	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1129	1130	first strand
Strand 2	B	1121	1123	anti-parallel
Strand 3	B	1146	1148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F29

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F29