Analysis of interatomic Contacts of Structural Units in PDB entry:
9F2D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F2D entry

There are 10 chains in PDB entry 9F2D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 165	PRO 275
B	ARG 27	VAL 220
C	ALA 167	ASP 273
D	LYS 28	THR 221
E	GLU 166	ALA 274
F	ARG 27	THR 221
G	GLU 166	ALA 274
H	ARG 27	THR 221
I	GLU 166	ASP 273
J	ARG 27	TRP 50

There are 57 helices in PDB entry 9F2D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	165	186	Right-handed alpha
Helix 2	AA2	A	192	197	Right-handed alpha
Helix 3	AA3	A	206	219	Right-handed alpha
Helix 4	AA4	A	220	226	Right-handed 310
Helix 5	AA5	A	234	242	Right-handed alpha
Helix 6	AA6	A	259	274	Right-handed alpha
Helix 7	AA7	B	91	95	Right-handed 310
Helix 8	AA8	C	168	185	Right-handed alpha
Helix 9	AA9	C	192	199	Right-handed alpha
Helix 10	AB1	C	206	219	Right-handed alpha
Helix 11	AB2	C	220	225	Right-handed 310
Helix 12	AB3	C	234	242	Right-handed alpha
Helix 13	AB4	C	259	273	Right-handed alpha
Helix 14	AB5	D	91	95	Right-handed 310
Helix 15	AB6	E	167	186	Right-handed alpha
Helix 16	AB7	E	192	197	Right-handed alpha
Helix 17	AB8	E	206	219	Right-handed alpha
Helix 18	AB9	E	220	226	Right-handed 310
Helix 19	AC1	E	234	242	Right-handed alpha
Helix 20	AC2	E	259	273	Right-handed alpha
Helix 21	AC3	F	91	95	Right-handed 310
Helix 22	AC4	F	176	180	Right-handed 310
Helix 23	AC5	G	167	186	Right-handed alpha
Helix 24	AC6	G	195	199	Right-handed 310
Helix 25	AC7	G	207	219	Right-handed alpha
Helix 26	AC8	G	220	224	Right-handed 310
Helix 27	AC9	G	235	242	Right-handed alpha
Helix 28	AD1	G	259	273	Right-handed alpha
Helix 29	AD2	H	91	94	Right-handed 310
Helix 30	AD3	I	167	186	Right-handed alpha
Helix 31	AD4	I	192	197	Right-handed alpha
Helix 32	AD5	I	206	219	Right-handed alpha
Helix 33	AD6	I	220	226	Right-handed 310
Helix 34	AD7	I	234	242	Right-handed alpha
Helix 35	AD8	I	259	273	Right-handed alpha
Helix 36	AD9	J	91	95	Right-handed 310
Helix 37	AE1	K	167	186	Right-handed alpha
Helix 38	AE2	K	192	197	Right-handed alpha
Helix 39	AE3	K	206	219	Right-handed alpha
Helix 40	AE4	K	220	224	Right-handed 310
Helix 41	AE5	K	234	242	Right-handed alpha
Helix 42	AE6	K	259	273	Right-handed alpha
Helix 43	AE7	L	91	95	Right-handed 310
Helix 44	AE8	M	167	186	Right-handed alpha
Helix 45	AE9	M	192	197	Right-handed alpha
Helix 46	AF1	M	206	219	Right-handed alpha
Helix 47	AF2	M	220	223	Right-handed 310
Helix 48	AF3	M	234	243	Right-handed alpha
Helix 49	AF4	M	259	272	Right-handed alpha
Helix 50	AF5	N	91	95	Right-handed 310
Helix 51	AF6	O	168	186	Right-handed alpha
Helix 52	AF7	O	192	197	Right-handed alpha
Helix 53	AF8	O	206	219	Right-handed alpha
Helix 54	AF9	O	220	225	Right-handed 310
Helix 55	AG1	O	234	242	Right-handed alpha
Helix 56	AG2	O	259	273	Right-handed alpha
Helix 57	AG3	P	91	95	Right-handed 310

There are 40 sheets in PDB entry 9F2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	258	first strand
Strand 2	B	68	73	anti-parallel
Strand 3	B	57	63	anti-parallel
Strand 4	B	96	103	anti-parallel
Strand 5	B	118	123	anti-parallel
Strand 6	B	38	40	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	80	87	anti-parallel
Strand 4	B	75	77	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	134	first strand
Strand 2	B	144	151	anti-parallel
Strand 3	B	180	189	anti-parallel
Strand 4	B	176	177	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	194	202	anti-parallel
Strand 4	B	205	209	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	194	202	anti-parallel
Strand 4	B	216	218	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	258	first strand
Strand 2	D	69	72	anti-parallel
Strand 3	D	57	63	anti-parallel
Strand 4	D	96	105	anti-parallel
Strand 5	D	118	123	anti-parallel
Strand 6	D	38	40	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	258	first strand
Strand 2	D	69	72	anti-parallel
Strand 3	D	57	63	anti-parallel
Strand 4	D	96	105	anti-parallel
Strand 5	D	110	111	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	80	87	anti-parallel
Strand 4	D	75	77	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	144	151	anti-parallel
Strand 3	D	181	189	anti-parallel
Strand 4	D	174	175	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	216	220	parallel
Strand 3	D	194	202	anti-parallel
Strand 4	D	157	162	anti-parallel
Strand 5	D	169	172	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	216	220	parallel
Strand 3	D	194	202	anti-parallel
Strand 4	D	205	209	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	258	first strand
Strand 2	F	68	73	anti-parallel
Strand 3	F	57	63	anti-parallel
Strand 4	F	96	103	anti-parallel
Strand 5	F	118	123	anti-parallel
Strand 6	F	38	40	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	34	first strand
Strand 2	F	45	51	anti-parallel
Strand 3	F	81	87	anti-parallel
Strand 4	F	75	76	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	134	first strand
Strand 2	F	144	151	anti-parallel
Strand 3	F	181	189	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	138	140	first strand
Strand 2	F	216	221	parallel
Strand 3	F	194	202	anti-parallel
Strand 4	F	157	162	anti-parallel
Strand 5	F	169	172	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	138	140	first strand
Strand 2	F	216	221	parallel
Strand 3	F	194	202	anti-parallel
Strand 4	F	205	209	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	257	258	first strand
Strand 2	H	68	72	anti-parallel
Strand 3	H	58	64	anti-parallel
Strand 4	H	96	101	anti-parallel
Strand 5	H	118	123	anti-parallel
Strand 6	H	38	40	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	34	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	80	87	anti-parallel
Strand 4	H	75	77	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	144	151	anti-parallel
Strand 3	H	181	189	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	139	first strand
Strand 2	H	216	220	parallel
Strand 3	H	194	202	anti-parallel
Strand 4	H	157	162	anti-parallel
Strand 5	H	169	171	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	139	first strand
Strand 2	H	216	220	parallel
Strand 3	H	194	202	anti-parallel
Strand 4	H	205	209	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	257	258	first strand
Strand 2	J	68	73	anti-parallel
Strand 3	J	57	63	anti-parallel
Strand 4	J	96	103	anti-parallel
Strand 5	J	118	123	anti-parallel
Strand 6	J	205	209	parallel
Strand 7	J	194	202	anti-parallel
Strand 8	J	216	221	anti-parallel
Strand 9	J	138	140	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	38	40	first strand
Strand 2	J	118	123	parallel
Strand 3	J	205	209	parallel
Strand 4	J	194	202	anti-parallel
Strand 5	J	157	162	anti-parallel
Strand 6	J	168	172	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	30	34	first strand
Strand 2	J	45	51	anti-parallel
Strand 3	J	80	87	anti-parallel
Strand 4	J	75	77	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	130	134	first strand
Strand 2	J	144	151	anti-parallel
Strand 3	J	181	189	anti-parallel
Strand 4	J	174	175	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	257	258	first strand
Strand 2	L	68	73	anti-parallel
Strand 3	L	57	63	anti-parallel
Strand 4	L	96	101	anti-parallel
Strand 5	L	118	123	anti-parallel
Strand 6	L	38	40	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	34	first strand
Strand 2	L	45	50	anti-parallel
Strand 3	L	81	87	anti-parallel
Strand 4	L	75	76	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	130	134	first strand
Strand 2	L	144	151	anti-parallel
Strand 3	L	180	189	anti-parallel
Strand 4	L	176	177	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	138	139	first strand
Strand 2	L	216	220	parallel
Strand 3	L	194	202	anti-parallel
Strand 4	L	157	162	anti-parallel
Strand 5	L	168	172	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	138	139	first strand
Strand 2	L	216	220	parallel
Strand 3	L	194	202	anti-parallel
Strand 4	L	205	209	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	257	258	first strand
Strand 2	N	68	73	anti-parallel
Strand 3	N	57	63	anti-parallel
Strand 4	N	96	103	anti-parallel
Strand 5	N	118	123	anti-parallel
Strand 6	N	38	40	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	30	34	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	81	87	anti-parallel
Strand 4	N	75	76	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	130	134	first strand
Strand 2	N	144	151	anti-parallel
Strand 3	N	181	189	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	138	139	first strand
Strand 2	N	216	220	parallel
Strand 3	N	194	202	anti-parallel
Strand 4	N	157	162	anti-parallel
Strand 5	N	169	172	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	138	139	first strand
Strand 2	N	216	220	parallel
Strand 3	N	194	202	anti-parallel
Strand 4	N	205	209	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	257	258	first strand
Strand 2	P	68	72	anti-parallel
Strand 3	P	57	63	anti-parallel
Strand 4	P	96	103	anti-parallel
Strand 5	P	118	123	anti-parallel
Strand 6	P	38	40	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	30	34	first strand
Strand 2	P	45	51	anti-parallel
Strand 3	P	80	87	anti-parallel
Strand 4	P	75	77	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	130	134	first strand
Strand 2	P	144	151	anti-parallel
Strand 3	P	181	189	anti-parallel
Strand 4	P	174	175	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	138	139	first strand
Strand 2	P	216	220	parallel
Strand 3	P	194	202	anti-parallel
Strand 4	P	157	162	anti-parallel
Strand 5	P	168	172	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	138	139	first strand
Strand 2	P	216	220	parallel
Strand 3	P	194	202	anti-parallel
Strand 4	P	205	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F2D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F2D