Analysis of interatomic Contacts of Structural Units in PDB entry:
9F2J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F2J entry

There are 2 chains in PDB entry 9F2J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 1	LEU 1296
A	ALA 92	ARG 678

There are 58 helices in PDB entry 9F2J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	80	101	Right-handed alpha
Helix 2	AA2	B	101	114	Right-handed alpha
Helix 3	AA3	B	216	233	Right-handed alpha
Helix 4	AA4	B	259	267	Right-handed alpha
Helix 5	AA5	B	269	274	Right-handed 310
Helix 6	AA6	B	275	300	Right-handed alpha
Helix 7	AA7	B	309	322	Right-handed alpha
Helix 8	AA8	B	334	347	Right-handed alpha
Helix 9	AA9	B	350	359	Right-handed alpha
Helix 10	AB1	B	409	411	Right-handed 310
Helix 11	AB2	B	467	471	Right-handed 310
Helix 12	AB3	B	496	506	Right-handed alpha
Helix 13	AB4	B	549	557	Right-handed alpha
Helix 14	AB5	B	571	576	Right-handed alpha
Helix 15	AB6	B	587	595	Right-handed alpha
Helix 16	AB7	B	602	619	Right-handed alpha
Helix 17	AB8	B	636	642	Right-handed alpha
Helix 18	AB9	B	643	646	Right-handed 310
Helix 19	AC1	B	648	660	Right-handed alpha
Helix 20	AC2	B	689	721	Right-handed alpha
Helix 21	AC3	B	721	753	Right-handed alpha
Helix 22	AC4	B	755	762	Right-handed alpha
Helix 23	AC5	B	765	800	Right-handed alpha
Helix 24	AC6	B	800	824	Right-handed alpha
Helix 25	AC7	B	833	847	Right-handed alpha
Helix 26	AC8	B	852	856	Right-handed 310
Helix 27	AC9	B	859	872	Right-handed alpha
Helix 28	AD1	B	873	877	Right-handed 310
Helix 29	AD2	B	954	958	Right-handed 310
Helix 30	AD3	B	1080	1092	Right-handed alpha
Helix 31	AD4	B	1266	1270	Right-handed 310
Helix 32	AD5	A	93	103	Right-handed alpha
Helix 33	AD6	A	105	131	Right-handed alpha
Helix 34	AD7	A	132	137	Right-handed alpha
Helix 35	AD8	A	149	151	Right-handed 310
Helix 36	AD9	A	152	168	Right-handed alpha
Helix 37	AE1	A	168	173	Right-handed alpha
Helix 38	AE2	A	174	194	Right-handed alpha
Helix 39	AE3	A	197	213	Right-handed alpha
Helix 40	AE4	A	215	225	Right-handed alpha
Helix 41	AE5	A	229	231	Right-handed 310
Helix 42	AE6	A	232	258	Right-handed alpha
Helix 43	AE7	A	274	283	Right-handed alpha
Helix 44	AE8	A	284	294	Right-handed alpha
Helix 45	AE9	A	300	308	Right-handed alpha
Helix 46	AF1	A	309	329	Right-handed alpha
Helix 47	AF2	A	371	381	Right-handed alpha
Helix 48	AF3	A	387	426	Right-handed alpha
Helix 49	AF4	A	505	507	Right-handed 310
Helix 50	AF5	A	529	533	Right-handed 310
Helix 51	AF6	A	535	548	Right-handed alpha
Helix 52	AF7	A	548	558	Right-handed alpha
Helix 53	AF8	A	566	581	Right-handed alpha
Helix 54	AF9	A	582	586	Right-handed 310
Helix 55	AG1	A	588	603	Right-handed alpha
Helix 56	AG2	A	604	617	Right-handed alpha
Helix 57	AG3	A	622	648	Right-handed alpha
Helix 58	AG4	A	653	671	Right-handed alpha

There are 17 sheets in PDB entry 9F2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	134	138	anti-parallel
Strand 3	B	19	23	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	42	48	anti-parallel
Strand 6	B	151	155	parallel
Strand 7	B	184	187	parallel
Strand 8	B	164	167	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	302	303	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	192	196	anti-parallel
Strand 3	B	372	376	anti-parallel
Strand 4	B	413	416	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	458	first strand
Strand 2	B	426	431	anti-parallel
Strand 3	B	541	545	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	481	first strand
Strand 2	B	679	681	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	569	first strand
Strand 2	B	581	583	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	881	883	first strand
Strand 2	B	888	890	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	900	first strand
Strand 2	B	924	928	anti-parallel
Strand 3	B	1052	1058	anti-parallel
Strand 4	B	962	966	anti-parallel
Strand 5	B	973	979	anti-parallel
Strand 6	B	982	988	anti-parallel
Strand 7	B	994	1000	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	904	906	first strand
Strand 2	B	914	917	anti-parallel
Strand 3	B	1066	1075	anti-parallel
Strand 4	B	940	948	anti-parallel
Strand 5	B	1015	1022	anti-parallel
Strand 6	B	1027	1031	anti-parallel
Strand 7	B	1034	1039	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1112	1115	first strand
Strand 2	B	1282	1285	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1122	1126	first strand
Strand 2	B	1133	1137	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1149	1151	first strand
Strand 2	B	1142	1145	anti-parallel
Strand 3	A	517	519	anti-parallel
Strand 4	A	498	500	parallel
Strand 5	A	478	480	parallel
Strand 6	A	458	460	parallel
Strand 7	A	439	440	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1160	1164	first strand
Strand 2	B	1178	1186	anti-parallel
Strand 3	B	1189	1194	anti-parallel
Strand 4	B	1207	1210	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1160	1164	first strand
Strand 2	B	1178	1186	anti-parallel
Strand 3	B	1221	1224	anti-parallel
Strand 4	B	1236	1240	anti-parallel
Strand 5	B	1246	1253	anti-parallel
Strand 6	B	1260	1264	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	431	first strand
Strand 2	A	444	450	parallel
Strand 3	A	463	470	parallel
Strand 4	A	483	485	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	431	first strand
Strand 2	A	444	450	parallel
Strand 3	A	463	470	parallel
Strand 4	A	488	490	parallel
Strand 5	A	509	510	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	495	first strand
Strand 2	A	513	515	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F2J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F2J