Analysis of interatomic Contacts of Structural Units in PDB entry:
9F2K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F2K entry

There is 1 chain in PDB entry 9F2K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 40PHE 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9F2K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 119Right-handed alpha
Helix 2
AA2
A
136 141Right-handed alpha
Helix 3
AA3
A
160 162Right-handed 310
Helix 4
AA4
A
167 171Right-handed 310
Helix 5
AA5
A
182 191Right-handed alpha
Helix 6
AA6
A
194 206Right-handed alpha
Helix 7
AA7
A
221 225Right-handed 310
Helix 8
AA8
A
238 257Right-handed alpha
Helix 9
AA9
A
282 293Right-handed alpha
Helix 10
AB1
A
298 311Right-handed alpha
Helix 11
AB2
A
326 335Right-handed alpha
Helix 12
AB3
A
346 360Right-handed alpha
Helix 13
AB4
A
376 382Right-handed alpha
Helix 14
AB5
A
384 397Right-handed alpha
Helix 15
AB6
A
399 406Right-handed alpha
Helix 16
AB7
A
443 445Right-handed 310
Helix 17
AB8
A
458 477Right-handed alpha
Helix 18
AB9
A
489 493Right-handed 310
Helix 19
AC1
A
500 507Right-handed 310
Helix 20
AC2
A
521 536Right-handed alpha
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There are 5 sheets in PDB entry 9F2K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 68first strand
Strand 2
A
74 87anti-parallel
Strand 3
A
479 483anti-parallel
Strand 4
A
494 495anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
94 99parallel
Strand 3
A
260 265parallel
Strand 4
A
314 316parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
127 130anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
154 158anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 424first strand
Strand 2
A
364 374parallel
Strand 3
A
431 442anti-parallel
Strand 4
A
446 457anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il