Analysis of interatomic Contacts of Structural Units in PDB entry:
9F2R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F2R entry

There are 5 chains in PDB entry 9F2R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	GLY 714
B	GLY 0	ARG 755
C	SER -1	ILE 743
R	A 4	U 18
V	A 1	G 16

There are 99 helices in PDB entry 9F2R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	9	Right-handed alpha
Helix 2	AA2	A	10	23	Right-handed alpha
Helix 3	AA3	A	32	50	Right-handed alpha
Helix 4	AA4	A	83	99	Right-handed alpha
Helix 5	AA5	A	126	138	Right-handed alpha
Helix 6	AA6	A	158	160	Right-handed 310
Helix 7	AA7	A	164	184	Right-handed alpha
Helix 8	AA8	A	187	192	Right-handed alpha
Helix 9	AA9	A	208	217	Right-handed alpha
Helix 10	AB1	A	225	236	Right-handed alpha
Helix 11	AB2	A	240	247	Right-handed alpha
Helix 12	AB3	A	261	265	Right-handed 310
Helix 13	AB4	A	302	312	Right-handed alpha
Helix 14	AB5	A	330	348	Right-handed alpha
Helix 15	AB6	A	358	365	Right-handed alpha
Helix 16	AB7	A	375	379	Right-handed 310
Helix 17	AB8	A	400	410	Right-handed alpha
Helix 18	AB9	A	428	446	Right-handed alpha
Helix 19	AC1	A	448	471	Right-handed alpha
Helix 20	AC2	A	524	533	Right-handed 310
Helix 21	AC3	A	567	575	Right-handed alpha
Helix 22	AC4	A	577	599	Right-handed alpha
Helix 23	AC5	A	602	609	Right-handed alpha
Helix 24	AC6	A	627	645	Right-handed alpha
Helix 25	AC7	A	647	669	Right-handed alpha
Helix 26	AC8	A	677	687	Right-handed alpha
Helix 27	AC9	A	692	712	Right-handed alpha
Helix 28	AD1	B	5	11	Right-handed 310
Helix 29	AD2	B	13	22	Right-handed 310
Helix 30	AD3	B	35	49	Right-handed alpha
Helix 31	AD4	B	84	99	Right-handed alpha
Helix 32	AD5	B	101	117	Right-handed alpha
Helix 33	AD6	B	118	124	Right-handed 310
Helix 34	AD7	B	139	153	Right-handed alpha
Helix 35	AD8	B	156	161	Right-handed 310
Helix 36	AD9	B	162	174	Right-handed alpha
Helix 37	AE1	B	213	222	Right-handed alpha
Helix 38	AE2	B	245	265	Right-handed alpha
Helix 39	AE3	B	274	293	Right-handed alpha
Helix 40	AE4	B	308	313	Right-handed alpha
Helix 41	AE5	B	314	326	Right-handed alpha
Helix 42	AE6	B	330	346	Right-handed alpha
Helix 43	AE7	B	370	375	Right-handed 310
Helix 44	AE8	B	377	381	Right-handed 310
Helix 45	AE9	B	382	394	Right-handed alpha
Helix 46	AF1	B	412	426	Right-handed alpha
Helix 47	AF2	B	428	433	Right-handed alpha
Helix 48	AF3	B	455	473	Right-handed alpha
Helix 49	AF4	B	504	512	Right-handed 310
Helix 50	AF5	B	518	537	Right-handed alpha
Helix 51	AF6	B	540	560	Right-handed alpha
Helix 52	AF7	B	572	582	Right-handed alpha
Helix 53	AF8	B	585	589	Right-handed 310
Helix 54	AF9	B	590	594	Right-handed 310
Helix 55	AG1	B	600	604	Right-handed 310
Helix 56	AG2	B	607	613	Right-handed alpha
Helix 57	AG3	B	614	616	Right-handed 310
Helix 58	AG4	B	617	625	Right-handed alpha
Helix 59	AG5	B	636	640	Right-handed 310
Helix 60	AG6	B	672	679	Right-handed 310
Helix 61	AG7	B	680	700	Right-handed alpha
Helix 62	AG8	B	701	705	Right-handed 310
Helix 63	AG9	B	713	731	Right-handed alpha
Helix 64	AH1	B	736	754	Right-handed alpha
Helix 65	AH2	C	0	13	Right-handed alpha
Helix 66	AH3	C	13	23	Right-handed alpha
Helix 67	AH4	C	24	32	Right-handed alpha
Helix 68	AH5	C	42	51	Right-handed alpha
Helix 69	AH6	C	62	67	Right-handed alpha
Helix 70	AH7	C	93	103	Right-handed alpha
Helix 71	AH8	C	110	115	Right-handed alpha
Helix 72	AH9	C	115	127	Right-handed alpha
Helix 73	AI1	C	155	168	Right-handed alpha
Helix 74	AI2	C	169	172	Right-handed 310
Helix 75	AI3	C	179	193	Right-handed alpha
Helix 76	AI4	C	199	212	Right-handed alpha
Helix 77	AI5	C	225	230	Right-handed alpha
Helix 78	AI6	C	231	236	Right-handed alpha
Helix 79	AI7	C	251	271	Right-handed alpha
Helix 80	AI8	C	275	287	Right-handed alpha
Helix 81	AI9	C	294	301	Right-handed alpha
Helix 82	AJ1	C	305	315	Right-handed alpha
Helix 83	AJ2	C	390	406	Right-handed alpha
Helix 84	AJ3	C	407	412	Right-handed alpha
Helix 85	AJ4	C	429	441	Right-handed alpha
Helix 86	AJ5	C	442	447	Right-handed alpha
Helix 87	AJ6	C	514	518	Right-handed 310
Helix 88	AJ7	C	541	556	Right-handed alpha
Helix 89	AJ8	C	556	567	Right-handed alpha
Helix 90	AJ9	C	567	573	Right-handed alpha
Helix 91	AK1	C	574	576	Right-handed 310
Helix 92	AK2	C	577	582	Right-handed alpha
Helix 93	AK3	C	583	584	Right-handed 310
Helix 94	AK4	C	585	587	Right-handed 310
Helix 95	AK5	C	588	606	Right-handed alpha
Helix 96	AK6	C	611	619	Right-handed alpha
Helix 97	AK7	C	620	623	Right-handed 310
Helix 98	AK8	C	701	705	Right-handed 310
Helix 99	AK9	C	712	716	Right-handed 310

There are 25 sheets in PDB entry 9F2R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	52	54	anti-parallel
Strand 3	A	73	74	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	109	111	anti-parallel
Strand 3	A	116	123	anti-parallel
Strand 4	A	143	149	parallel
Strand 5	A	154	156	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	674	675	anti-parallel
Strand 3	B	483	486	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	446	453	anti-parallel
Strand 6	B	436	443	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	396	397	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	491	501	anti-parallel
Strand 3	A	475	486	anti-parallel
Strand 4	A	354	355	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	324	first strand
Strand 2	A	536	546	anti-parallel
Strand 3	A	551	566	anti-parallel
Strand 4	A	512	521	anti-parallel
Strand 5	A	491	501	anti-parallel
Strand 6	A	475	486	anti-parallel
Strand 7	A	415	416	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel
Strand 4	A	386	387	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	626	first strand
Strand 2	A	614	618	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	135	138	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	183	first strand
Strand 2	B	208	211	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	244	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	492	first strand
Strand 2	B	495	498	anti-parallel
Strand 3	B	501	502	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	645	first strand
Strand 2	B	653	656	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	C	57	59	anti-parallel
Strand 3	C	89	91	anti-parallel
Strand 4	C	78	82	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	240	245	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	146	first strand
Strand 2	C	215	220	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	293	first strand
Strand 2	C	288	289	anti-parallel
Strand 3	C	529	530	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	325	first strand
Strand 2	C	328	335	anti-parallel
Strand 3	C	355	365	anti-parallel
Strand 4	C	338	341	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	325	first strand
Strand 2	C	328	335	anti-parallel
Strand 3	C	355	365	anti-parallel
Strand 4	C	370	378	anti-parallel
Strand 5	C	383	388	anti-parallel
Strand 6	C	478	480	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	463	first strand
Strand 2	C	469	470	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	504	506	anti-parallel
Strand 3	C	511	513	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	635	640	first strand
Strand 2	C	643	648	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	656	659	first strand
Strand 2	C	664	667	anti-parallel
Strand 3	C	670	671	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	699	first strand
Strand 2	C	730	736	anti-parallel
Strand 3	C	721	727	anti-parallel
Strand 4	C	707	708	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F2R

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F2R