Analysis of interatomic Contacts of Structural Units in PDB entry:
9F2T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F2T entry

There are 2 chains in PDB entry 9F2T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 108	PHE 777
A	GLY 108	PHE 777

There are 15 helices in PDB entry 9F2T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	128	130	Right-handed 310
Helix 2	AA2	B	136	138	Right-handed 310
Helix 3	AA3	B	147	154	Right-handed alpha
Helix 4	AA4	B	157	166	Right-handed alpha
Helix 5	AA5	B	192	194	Right-handed 310
Helix 6	AA6	B	223	228	Right-handed alpha
Helix 7	AA7	B	275	278	Right-handed 310
Helix 8	AA8	B	480	484	Right-handed 310
Helix 9	AA9	A	128	130	Right-handed 310
Helix 10	AB1	A	136	138	Right-handed 310
Helix 11	AB2	A	147	154	Right-handed alpha
Helix 12	AB3	A	157	166	Right-handed alpha
Helix 13	AB4	A	192	194	Right-handed 310
Helix 14	AB5	A	223	228	Right-handed alpha
Helix 15	AB6	A	480	484	Right-handed 310

There are 10 sheets in PDB entry 9F2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	142	146	anti-parallel
Strand 3	B	213	220	anti-parallel
Strand 4	B	237	243	anti-parallel
Strand 5	B	195	196	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	132	134	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	173	first strand
Strand 2	B	180	184	anti-parallel
Strand 3	B	187	190	anti-parallel

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There are 26 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	754	756	first strand
Strand 2	B	760	763	anti-parallel
Strand 3	B	336	337	anti-parallel
Strand 4	B	381	403	parallel
Strand 5	B	409	436	anti-parallel
Strand 6	B	439	467	anti-parallel
Strand 7	B	491	506	anti-parallel
Strand 8	B	511	527	anti-parallel
Strand 9	B	534	554	anti-parallel
Strand 10	B	557	568	anti-parallel
Strand 11	B	587	599	anti-parallel
Strand 12	B	603	619	anti-parallel
Strand 13	B	625	645	anti-parallel
Strand 14	B	648	663	anti-parallel
Strand 15	B	680	689	anti-parallel
Strand 16	B	696	705	anti-parallel
Strand 17	B	721	734	anti-parallel
Strand 18	B	737	746	anti-parallel
Strand 19	B	768	777	anti-parallel
Strand 20	B	251	259	anti-parallel
Strand 21	B	263	274	anti-parallel
Strand 22	B	280	292	anti-parallel
Strand 23	B	299	312	anti-parallel
Strand 24	B	316	330	anti-parallel
Strand 25	B	361	378	anti-parallel
Strand 26	B	381	403	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	709	first strand
Strand 2	B	717	718	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	A	132	134	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	213	220	anti-parallel
Strand 3	A	237	243	anti-parallel
Strand 4	A	195	196	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	181	184	anti-parallel
Strand 3	A	187	190	anti-parallel

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There are 26 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	754	756	first strand
Strand 2	A	760	763	anti-parallel
Strand 3	A	336	337	anti-parallel
Strand 4	A	381	404	parallel
Strand 5	A	409	436	anti-parallel
Strand 6	A	439	467	anti-parallel
Strand 7	A	491	506	anti-parallel
Strand 8	A	511	527	anti-parallel
Strand 9	A	534	554	anti-parallel
Strand 10	A	557	568	anti-parallel
Strand 11	A	587	599	anti-parallel
Strand 12	A	603	619	anti-parallel
Strand 13	A	625	645	anti-parallel
Strand 14	A	648	663	anti-parallel
Strand 15	A	680	689	anti-parallel
Strand 16	A	696	705	anti-parallel
Strand 17	A	721	734	anti-parallel
Strand 18	A	737	746	anti-parallel
Strand 19	A	768	777	anti-parallel
Strand 20	A	251	259	anti-parallel
Strand 21	A	263	274	anti-parallel
Strand 22	A	280	292	anti-parallel
Strand 23	A	299	312	anti-parallel
Strand 24	A	316	330	anti-parallel
Strand 25	A	361	378	anti-parallel
Strand 26	A	381	404	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	709	first strand
Strand 2	A	717	718	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F2T

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F2T