Analysis of interatomic Contacts of Structural Units in PDB entry:
9F38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F38 entry

There are 6 chains in PDB entry 9F38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 676
E
 G 1 C 13
F
 G 1 C 13
U
 G 1 C 13
V
 G 1 C 13
Z
 MET 1SER 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9F38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 25Right-handed alpha
Helix 2
AA2
A
76 81Right-handed alpha
Helix 3
AA3
A
116 121Right-handed 310
Helix 4
AA4
A
123 132Right-handed alpha
Helix 5
AA5
A
163 177Right-handed alpha
Helix 6
AA6
A
195 199Right-handed 310
Helix 7
AA7
A
202 206Right-handed 310
Helix 8
AA8
A
207 220Right-handed alpha
Helix 9
AA9
A
224 244Right-handed alpha
Helix 10
AB1
A
253 262Right-handed alpha
Helix 11
AB2
A
283 287Right-handed 310
Helix 12
AB3
A
290 302Right-handed alpha
Helix 13
AB4
A
316 332Right-handed alpha
Helix 14
AB5
A
335 343Right-handed alpha
Helix 15
AB6
A
364 367Right-handed 310
Helix 16
AB7
A
368 378Right-handed alpha
Helix 17
AB8
A
392 402Right-handed alpha
Helix 18
AB9
A
402 410Right-handed alpha
Helix 19
AC1
A
410 420Right-handed alpha
Helix 20
AC2
A
442 451Right-handed alpha
Helix 21
AC3
A
469 483Right-handed alpha
Helix 22
AC4
A
550 554Right-handed 310
Helix 23
AC5
A
557 571Right-handed alpha
Helix 24
AC6
A
593 597Right-handed 310
Helix 25
AC7
A
612 624Right-handed alpha
Helix 26
AC8
A
648 661Right-handed alpha
Helix 27
AC9
A
668 670Right-handed 310
Helix 28
AD1
Z
10 25Right-handed alpha
Helix 29
AD2
Z
76 81Right-handed alpha
Helix 30
AD3
Z
116 121Right-handed 310
Helix 31
AD4
Z
123 132Right-handed alpha
Helix 32
AD5
Z
163 177Right-handed alpha
Helix 33
AD6
Z
195 199Right-handed 310
Helix 34
AD7
Z
202 206Right-handed 310
Helix 35
AD8
Z
207 220Right-handed alpha
Helix 36
AD9
Z
224 244Right-handed alpha
Helix 37
AE1
Z
253 262Right-handed alpha
Helix 38
AE2
Z
283 287Right-handed 310
Helix 39
AE3
Z
290 302Right-handed alpha
Helix 40
AE4
Z
316 332Right-handed alpha
Helix 41
AE5
Z
335 343Right-handed alpha
Helix 42
AE6
Z
364 367Right-handed 310
Helix 43
AE7
Z
368 378Right-handed alpha
Helix 44
AE8
Z
392 402Right-handed alpha
Helix 45
AE9
Z
402 410Right-handed alpha
Helix 46
AF1
Z
410 420Right-handed alpha
Helix 47
AF2
Z
442 451Right-handed alpha
Helix 48
AF3
Z
469 483Right-handed alpha
Helix 49
AF4
Z
550 554Right-handed 310
Helix 50
AF5
Z
557 571Right-handed alpha
Helix 51
AF6
Z
593 597Right-handed 310
Helix 52
AF7
Z
612 624Right-handed alpha
Helix 53
AF8
Z
648 661Right-handed alpha
Helix 54
AF9
Z
668 670Right-handed 310
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There are 8 sheets in PDB entry 9F38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
51 61anti-parallel
Strand 4
A
2 8parallel
Strand 5
A
92 98anti-parallel
Strand 6
A
101 111anti-parallel
Strand 7
A
137 143parallel
Strand 8
A
180 186parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
312 315anti-parallel
Strand 3
A
348 353anti-parallel
Strand 4
A
382 387parallel
Strand 5
A
422 427parallel
Strand 6
A
436 441anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 493first strand
Strand 2
A
529 533anti-parallel
Strand 3
A
541 547anti-parallel
Strand 4
A
598 606parallel
Strand 5
A
627 634parallel
Strand 6
A
639 646anti-parallel
Strand 7
A
672 676parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 507first strand
Strand 2
A
510 514anti-parallel
Strand 3
A
576 579anti-parallel
Strand 4
A
586 587anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
29 34first strand
Strand 2
Z
40 48anti-parallel
Strand 3
Z
51 61anti-parallel
Strand 4
Z
2 8parallel
Strand 5
Z
92 98anti-parallel
Strand 6
Z
101 111anti-parallel
Strand 7
Z
137 143parallel
Strand 8
Z
180 186parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
303 304first strand
Strand 2
Z
312 315anti-parallel
Strand 3
Z
348 353anti-parallel
Strand 4
Z
382 387parallel
Strand 5
Z
422 427parallel
Strand 6
Z
436 441anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
488 493first strand
Strand 2
Z
529 533anti-parallel
Strand 3
Z
541 547anti-parallel
Strand 4
Z
598 606parallel
Strand 5
Z
627 634parallel
Strand 6
Z
639 646anti-parallel
Strand 7
Z
672 676parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
503 507first strand
Strand 2
Z
510 514anti-parallel
Strand 3
Z
576 579anti-parallel
Strand 4
Z
586 587anti-parallel
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