Analysis of interatomic Contacts of Structural Units in PDB entry:
9F3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F3F entry

There are 3 chains in PDB entry 9F3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 TYR 31TYR 1000
2
 MET 1ARG 179
3
 ARG 33ILE 82
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9F3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
44 54Right-handed alpha
Helix 2
AA2
1
55 62Right-handed 310
Helix 3
AA3
1
91 98Right-handed alpha
Helix 4
AA4
1
109 114Right-handed alpha
Helix 5
AA5
1
120 125Right-handed alpha
Helix 6
AA6
1
149 165Right-handed alpha
Helix 7
AA7
1
178 191Right-handed alpha
Helix 8
AA8
1
213 223Right-handed alpha
Helix 9
AA9
1
254 276Right-handed alpha
Helix 10
AB1
1
278 291Right-handed alpha
Helix 11
AB2
1
295 321Right-handed alpha
Helix 12
AB3
1
328 349Right-handed alpha
Helix 13
AB4
1
363 385Right-handed alpha
Helix 14
AB5
1
389 394Right-handed alpha
Helix 15
AB6
1
411 420Right-handed alpha
Helix 16
AB7
1
420 429Right-handed alpha
Helix 17
AB8
1
434 447Right-handed alpha
Helix 18
AB9
1
462 476Right-handed alpha
Helix 19
AC1
1
479 487Right-handed alpha
Helix 20
AC2
1
488 490Right-handed 310
Helix 21
AC3
1
491 499Right-handed alpha
Helix 22
AC4
1
533 552Right-handed alpha
Helix 23
AC5
1
553 566Right-handed alpha
Helix 24
AC6
1
568 577Right-handed alpha
Helix 25
AC7
1
602 627Right-handed alpha
Helix 26
AC8
1
630 653Right-handed alpha
Helix 27
AC9
1
683 692Right-handed alpha
Helix 28
AD1
1
698 701Right-handed 310
Helix 29
AD2
1
702 714Right-handed alpha
Helix 30
AD3
1
739 748Right-handed alpha
Helix 31
AD4
1
766 779Right-handed alpha
Helix 32
AD5
1
837 849Right-handed alpha
Helix 33
AD6
1
851 856Right-handed alpha
Helix 34
AD7
1
866 892Right-handed alpha
Helix 35
AD8
1
900 904Right-handed 310
Helix 36
AD9
1
913 937Right-handed alpha
Helix 37
AE1
1
941 965Right-handed alpha
Helix 38
AE2
1
979 985Right-handed alpha
Helix 39
AE3
1
987 997Right-handed alpha
Helix 40
AE4
2
5 9Right-handed 310
Helix 41
AE5
2
16 22Right-handed alpha
Helix 42
AE6
2
29 39Right-handed alpha
Helix 43
AE7
2
54 63Right-handed alpha
Helix 44
AE8
2
92 103Right-handed alpha
Helix 45
AE9
3
44 58Right-handed alpha
Helix 46
AF1
3
64 70Right-handed alpha
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There are 5 sheets in PDB entry 9F3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
245 246first strand
Strand 2
1
404 405anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
409 410first strand
Strand 2
1
458 459anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
663 664first strand
Strand 2
1
681 682anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
787 788first strand
Strand 2
1
832 833anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
43 45first strand
Strand 2
2
82 90anti-parallel
Strand 3
2
68 76anti-parallel
Strand 4
2
127 128parallel
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