Analysis of interatomic Contacts of Structural Units in PDB entry:
9F3I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F3I entry

There are 2 chains in PDB entry 9F3I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	TYR 481
B	SER 2	LEU 160

There are 92 helices in PDB entry 9F3I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	17	Right-handed alpha
Helix 2	AA2	A	20	39	Right-handed alpha
Helix 3	AA3	A	105	110	Right-handed 310
Helix 4	AA4	A	116	136	Right-handed alpha
Helix 5	AA5	A	174	178	Right-handed 310
Helix 6	AA6	A	181	192	Right-handed alpha
Helix 7	AA7	A	193	196	Right-handed 310
Helix 8	AA8	A	205	218	Right-handed alpha
Helix 9	AA9	A	219	225	Right-handed alpha
Helix 10	AB1	A	247	249	Right-handed 310
Helix 11	AB2	A	253	263	Right-handed alpha
Helix 12	AB3	A	273	277	Right-handed 310
Helix 13	AB4	A	287	296	Right-handed alpha
Helix 14	AB5	A	306	310	Right-handed 310
Helix 15	AB6	A	311	329	Right-handed alpha
Helix 16	AB7	A	347	356	Right-handed alpha
Helix 17	AB8	A	358	362	Right-handed 310
Helix 18	AB9	A	363	375	Right-handed alpha
Helix 19	AC1	A	379	413	Right-handed alpha
Helix 20	AC2	A	429	435	Right-handed alpha
Helix 21	AC3	A	437	449	Right-handed alpha
Helix 22	AC4	A	451	457	Right-handed alpha
Helix 23	AC5	A	467	479	Right-handed alpha
Helix 24	AC6	B	3	17	Right-handed alpha
Helix 25	AC7	B	20	39	Right-handed alpha
Helix 26	AC8	B	105	110	Right-handed 310
Helix 27	AC9	B	116	136	Right-handed alpha
Helix 28	AD1	B	174	178	Right-handed 310
Helix 29	AD2	B	181	192	Right-handed alpha
Helix 30	AD3	B	193	196	Right-handed 310
Helix 31	AD4	B	205	218	Right-handed alpha
Helix 32	AD5	B	219	225	Right-handed alpha
Helix 33	AD6	B	247	249	Right-handed 310
Helix 34	AD7	B	253	263	Right-handed alpha
Helix 35	AD8	B	273	277	Right-handed 310
Helix 36	AD9	B	287	296	Right-handed alpha
Helix 37	AE1	B	306	310	Right-handed 310
Helix 38	AE2	B	311	329	Right-handed alpha
Helix 39	AE3	B	347	356	Right-handed alpha
Helix 40	AE4	B	358	362	Right-handed 310
Helix 41	AE5	B	363	375	Right-handed alpha
Helix 42	AE6	B	379	413	Right-handed alpha
Helix 43	AE7	B	429	435	Right-handed alpha
Helix 44	AE8	B	437	449	Right-handed alpha
Helix 45	AE9	B	451	457	Right-handed alpha
Helix 46	AF1	B	467	479	Right-handed alpha
Helix 47	AF2	C	3	17	Right-handed alpha
Helix 48	AF3	C	20	39	Right-handed alpha
Helix 49	AF4	C	105	110	Right-handed 310
Helix 50	AF5	C	116	136	Right-handed alpha
Helix 51	AF6	C	174	178	Right-handed 310
Helix 52	AF7	C	181	192	Right-handed alpha
Helix 53	AF8	C	193	196	Right-handed 310
Helix 54	AF9	C	205	218	Right-handed alpha
Helix 55	AG1	C	219	225	Right-handed alpha
Helix 56	AG2	C	247	249	Right-handed 310
Helix 57	AG3	C	253	263	Right-handed alpha
Helix 58	AG4	C	273	277	Right-handed 310
Helix 59	AG5	C	287	296	Right-handed alpha
Helix 60	AG6	C	306	310	Right-handed 310
Helix 61	AG7	C	311	329	Right-handed alpha
Helix 62	AG8	C	347	356	Right-handed alpha
Helix 63	AG9	C	358	362	Right-handed 310
Helix 64	AH1	C	363	375	Right-handed alpha
Helix 65	AH2	C	379	412	Right-handed alpha
Helix 66	AH3	C	429	435	Right-handed alpha
Helix 67	AH4	C	437	449	Right-handed alpha
Helix 68	AH5	C	451	457	Right-handed alpha
Helix 69	AH6	C	467	479	Right-handed alpha
Helix 70	AH7	D	3	17	Right-handed alpha
Helix 71	AH8	D	20	39	Right-handed alpha
Helix 72	AH9	D	105	110	Right-handed 310
Helix 73	AI1	D	116	136	Right-handed alpha
Helix 74	AI2	D	174	178	Right-handed 310
Helix 75	AI3	D	181	192	Right-handed alpha
Helix 76	AI4	D	193	196	Right-handed 310
Helix 77	AI5	D	205	218	Right-handed alpha
Helix 78	AI6	D	219	225	Right-handed alpha
Helix 79	AI7	D	247	249	Right-handed 310
Helix 80	AI8	D	253	263	Right-handed alpha
Helix 81	AI9	D	273	277	Right-handed 310
Helix 82	AJ1	D	287	296	Right-handed alpha
Helix 83	AJ2	D	306	310	Right-handed 310
Helix 84	AJ3	D	311	329	Right-handed alpha
Helix 85	AJ4	D	347	356	Right-handed alpha
Helix 86	AJ5	D	358	362	Right-handed 310
Helix 87	AJ6	D	363	375	Right-handed alpha
Helix 88	AJ7	D	379	413	Right-handed alpha
Helix 89	AJ8	D	429	435	Right-handed alpha
Helix 90	AJ9	D	437	449	Right-handed alpha
Helix 91	AK1	D	451	457	Right-handed alpha
Helix 92	AK2	D	467	479	Right-handed alpha

There are 12 sheets in PDB entry 9F3I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	238	245	anti-parallel
Strand 4	A	226	234	anti-parallel
Strand 5	A	422	428	parallel
Strand 6	A	459	463	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	103	first strand
Strand 2	A	81	91	anti-parallel
Strand 3	A	71	77	anti-parallel
Strand 4	A	145	151	parallel
Strand 5	A	198	204	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	159	first strand
Strand 2	A	162	165	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	267	271	anti-parallel
Strand 3	B	238	245	anti-parallel
Strand 4	B	226	234	anti-parallel
Strand 5	B	422	428	parallel
Strand 6	B	459	463	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	103	first strand
Strand 2	B	81	91	anti-parallel
Strand 3	B	72	77	anti-parallel
Strand 4	B	145	151	parallel
Strand 5	B	198	204	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	159	first strand
Strand 2	B	162	165	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	267	271	anti-parallel
Strand 3	C	238	245	anti-parallel
Strand 4	C	226	234	anti-parallel
Strand 5	C	422	428	parallel
Strand 6	C	459	463	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	103	first strand
Strand 2	C	81	91	anti-parallel
Strand 3	C	68	77	anti-parallel
Strand 4	C	145	151	parallel
Strand 5	C	198	204	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	159	first strand
Strand 2	C	162	165	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	267	271	anti-parallel
Strand 3	D	238	245	anti-parallel
Strand 4	D	226	234	anti-parallel
Strand 5	D	422	428	parallel
Strand 6	D	459	463	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	103	first strand
Strand 2	D	81	91	anti-parallel
Strand 3	D	72	77	anti-parallel
Strand 4	D	145	151	parallel
Strand 5	D	198	204	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	159	first strand
Strand 2	D	162	165	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F3I

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F3I