Analysis of interatomic Contacts of Structural Units in PDB entry:
9F3N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F3N entry

There are 2 chains in PDB entry 9F3N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TYR 481
B
 SER 2ILE 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9F3N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 17Right-handed alpha
Helix 2
AA2
A
20 40Right-handed alpha
Helix 3
AA3
A
105 110Right-handed 310
Helix 4
AA4
A
116 136Right-handed alpha
Helix 5
AA5
A
137 140Right-handed 310
Helix 6
AA6
A
174 178Right-handed 310
Helix 7
AA7
A
181 193Right-handed alpha
Helix 8
AA8
A
205 218Right-handed alpha
Helix 9
AA9
A
219 225Right-handed alpha
Helix 10
AB1
A
247 249Right-handed 310
Helix 11
AB2
A
253 263Right-handed alpha
Helix 12
AB3
A
273 277Right-handed 310
Helix 13
AB4
A
287 297Right-handed alpha
Helix 14
AB5
A
306 311Right-handed alpha
Helix 15
AB6
A
314 329Right-handed alpha
Helix 16
AB7
A
347 356Right-handed alpha
Helix 17
AB8
A
358 362Right-handed 310
Helix 18
AB9
A
363 375Right-handed alpha
Helix 19
AC1
A
379 412Right-handed alpha
Helix 20
AC2
A
429 435Right-handed alpha
Helix 21
AC3
A
437 449Right-handed alpha
Helix 22
AC4
A
451 457Right-handed alpha
Helix 23
AC5
A
469 479Right-handed alpha
Helix 24
AC6
B
3 16Right-handed alpha
Helix 25
AC7
B
20 40Right-handed alpha
Helix 26
AC8
B
105 110Right-handed 310
Helix 27
AC9
B
116 136Right-handed alpha
Helix 28
AD1
B
137 140Right-handed 310
Helix 29
AD2
B
174 178Right-handed 310
Helix 30
AD3
B
181 193Right-handed alpha
Helix 31
AD4
B
205 218Right-handed alpha
Helix 32
AD5
B
219 225Right-handed alpha
Helix 33
AD6
B
247 249Right-handed 310
Helix 34
AD7
B
253 263Right-handed alpha
Helix 35
AD8
B
273 277Right-handed 310
Helix 36
AD9
B
287 297Right-handed alpha
Helix 37
AE1
B
304 311Right-handed alpha
Helix 38
AE2
B
314 329Right-handed alpha
Helix 39
AE3
B
347 356Right-handed alpha
Helix 40
AE4
B
358 362Right-handed 310
Helix 41
AE5
B
363 375Right-handed alpha
Helix 42
AE6
B
379 412Right-handed alpha
Helix 43
AE7
B
429 435Right-handed alpha
Helix 44
AE8
B
437 449Right-handed alpha
Helix 45
AE9
B
451 457Right-handed alpha
Helix 46
AF1
B
466 479Right-handed alpha
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There are 6 sheets in PDB entry 9F3N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
267 271anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
226 234anti-parallel
Strand 5
A
422 428parallel
Strand 6
A
459 463parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 103first strand
Strand 2
A
81 91anti-parallel
Strand 3
A
68 77anti-parallel
Strand 4
A
145 151parallel
Strand 5
A
198 204parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 159first strand
Strand 2
A
162 165anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
267 271anti-parallel
Strand 3
B
238 245anti-parallel
Strand 4
B
226 234anti-parallel
Strand 5
B
422 428parallel
Strand 6
B
459 463parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 103first strand
Strand 2
B
81 91anti-parallel
Strand 3
B
72 77anti-parallel
Strand 4
B
145 151parallel
Strand 5
B
198 204parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 159first strand
Strand 2
B
162 165anti-parallel
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