Analysis of interatomic Contacts of Structural Units in PDB entry:
9F3Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F3Q entry

There are 3 chains in PDB entry 9F3Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 22TYR 302
B
 GLY 2GLN 341
C
 GLY 1ALA 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9F3Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 50Right-handed 310
Helix 2
AA2
A
56 60Right-handed 310
Helix 3
AA3
A
72 75Right-handed 310
Helix 4
AA4
A
76 81Right-handed alpha
Helix 5
AA5
A
116 123Right-handed alpha
Helix 6
AA6
A
172 177Right-handed 310
Helix 7
AA7
A
232 236Right-handed 310
Helix 8
AA8
B
35 39Right-handed 310
Helix 9
AA9
B
104 106Right-handed 310
Helix 10
AB1
B
112 116Right-handed 310
Helix 11
AB2
B
125 129Right-handed 310
Helix 12
AB3
B
152 156Right-handed 310
Helix 13
AB4
B
158 167Right-handed alpha
Helix 14
AB5
B
255 262Right-handed 310
Helix 15
AB6
C
43 48Right-handed alpha
Helix 16
AB7
C
65 69Right-handed 310
Helix 17
AB8
C
98 105Right-handed alpha
Helix 18
AB9
C
144 149Right-handed alpha
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There are 11 sheets in PDB entry 9F3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 94first strand
Strand 2
A
253 271anti-parallel
Strand 3
A
125 142anti-parallel
Strand 4
A
205 206anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 196first strand
Strand 2
A
125 142anti-parallel
Strand 3
A
253 271anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
239 244anti-parallel
Strand 3
A
154 160anti-parallel
Strand 4
A
182 186anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
27 29anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 87first strand
Strand 2
B
90 94anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
274 279parallel
Strand 3
B
168 180anti-parallel
Strand 4
B
316 332anti-parallel
Strand 5
B
133 140anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
147 151anti-parallel
Strand 3
B
296 308anti-parallel
Strand 4
B
187 197anti-parallel
Strand 5
B
264 268anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
207 216anti-parallel
Strand 3
C
70 73anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
207 216anti-parallel
Strand 3
C
114 120anti-parallel
Strand 4
C
163 168anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 86first strand
Strand 2
C
189 194anti-parallel
Strand 3
C
129 135anti-parallel
Strand 4
C
152 157anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
C
109 111anti-parallel
Strand 3
C
221 223anti-parallel
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