Analysis of interatomic Contacts of Structural Units in PDB entry:
9F3Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F3Z entry

There are 2 chains in PDB entry 9F3Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 2	CYS 477
A	MET 1	CYS 477

There are 9 helices in PDB entry 9F3Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	10	18	Right-handed 310
Helix 2	AA2	B	153	161	Right-handed alpha
Helix 3	AA3	B	202	207	Right-handed alpha
Helix 4	AA4	B	448	454	Right-handed alpha
Helix 5	AA5	A	10	18	Right-handed 310
Helix 6	AA6	A	153	161	Right-handed alpha
Helix 7	AA7	A	202	207	Right-handed alpha
Helix 8	AA8	A	348	352	Right-handed 310
Helix 9	AA9	A	448	455	Right-handed alpha

There are 14 sheets in PDB entry 9F3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	49	61	anti-parallel
Strand 3	B	69	74	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	49	61	anti-parallel
Strand 3	B	89	98	parallel
Strand 4	B	130	137	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	164	169	parallel
Strand 3	B	142	147	anti-parallel
Strand 4	B	106	108	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	219	first strand
Strand 2	B	186	194	anti-parallel
Strand 3	B	233	240	parallel
Strand 4	B	283	289	anti-parallel
Strand 5	B	257	262	anti-parallel
Strand 6	B	265	273	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	229	first strand
Strand 2	B	306	313	parallel
Strand 3	B	298	303	anti-parallel
Strand 4	B	247	251	anti-parallel
Strand 5	B	276	278	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	341	346	anti-parallel
Strand 3	B	374	380	parallel
Strand 4	B	429	434	anti-parallel
Strand 5	B	401	406	anti-parallel
Strand 6	B	418	419	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	369	first strand
Strand 2	B	457	463	parallel
Strand 3	B	440	446	anti-parallel
Strand 4	B	392	396	anti-parallel
Strand 5	B	421	424	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	225	229	parallel
Strand 3	A	306	313	parallel
Strand 4	A	298	303	anti-parallel
Strand 5	A	247	251	anti-parallel
Strand 6	A	275	278	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	49	61	anti-parallel
Strand 3	A	69	74	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	49	61	anti-parallel
Strand 3	A	89	98	parallel
Strand 4	A	130	137	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	164	169	parallel
Strand 3	A	142	147	anti-parallel
Strand 4	A	106	108	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	186	194	anti-parallel
Strand 3	A	233	240	parallel
Strand 4	A	283	289	anti-parallel
Strand 5	A	257	262	anti-parallel
Strand 6	A	265	273	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	341	346	anti-parallel
Strand 3	A	374	380	parallel
Strand 4	A	429	434	anti-parallel
Strand 5	A	401	406	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	369	first strand
Strand 2	A	457	463	parallel
Strand 3	A	440	446	anti-parallel
Strand 4	A	392	396	anti-parallel
Strand 5	A	421	424	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F3Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F3Z