Analysis of interatomic Contacts of Structural Units in PDB entry:
9F42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F42 entry

There are 2 chains in PDB entry 9F42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLU 18GLU 1331
G
 ARG 399GLU 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9F42. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
19 25Right-handed alpha
Helix 2
AA2
E
32 37Right-handed alpha
Helix 3
AA3
E
89 93Right-handed 310
Helix 4
AA4
E
94 112Right-handed alpha
Helix 5
AA5
E
126 141Right-handed alpha
Helix 6
AA6
E
179 186Right-handed alpha
Helix 7
AA7
E
198 219Right-handed alpha
Helix 8
AA8
E
262 269Right-handed alpha
Helix 9
AA9
E
269 279Right-handed alpha
Helix 10
AB1
E
280 287Right-handed 310
Helix 11
AB2
E
291 297Right-handed alpha
Helix 12
AB3
E
307 328Right-handed alpha
Helix 13
AB4
E
329 338Right-handed alpha
Helix 14
AB5
E
340 359Right-handed alpha
Helix 15
AB6
E
377 392Right-handed alpha
Helix 16
AB7
E
392 398Right-handed alpha
Helix 17
AB8
E
407 422Right-handed alpha
Helix 18
AB9
E
432 442Right-handed alpha
Helix 19
AC1
E
445 458Right-handed alpha
Helix 20
AC2
E
460 471Right-handed alpha
Helix 21
AC3
E
472 479Right-handed alpha
Helix 22
AC4
E
480 482Right-handed 310
Helix 23
AC5
E
486 502Right-handed alpha
Helix 24
AC6
E
504 512Right-handed alpha
Helix 25
AC7
E
513 523Right-handed alpha
Helix 26
AC8
E
528 543Right-handed alpha
Helix 27
AC9
E
546 556Right-handed alpha
Helix 28
AD1
E
557 565Right-handed alpha
Helix 29
AD2
E
570 585Right-handed alpha
Helix 30
AD3
E
588 598Right-handed alpha
Helix 31
AD4
E
599 605Right-handed alpha
Helix 32
AD5
E
606 610Right-handed 310
Helix 33
AD6
E
612 628Right-handed alpha
Helix 34
AD7
E
634 649Right-handed alpha
Helix 35
AD8
E
656 674Right-handed alpha
Helix 36
AD9
E
674 685Right-handed alpha
Helix 37
AE1
E
807 820Right-handed alpha
Helix 38
AE2
E
823 839Right-handed alpha
Helix 39
AE3
E
950 954Right-handed 310
Helix 40
AE4
E
958 965Right-handed alpha
Helix 41
AE5
E
966 968Right-handed 310
Helix 42
AE6
E
982 1008Right-handed alpha
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There are 9 sheets in PDB entry 9F42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
118 123first strand
Strand 2
E
57 64parallel
Strand 3
E
145 151parallel
Strand 4
E
191 195parallel
Strand 5
E
241 244parallel
Strand 6
E
365 366anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
163 167first strand
Strand 2
E
174 178anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1015 1016first strand
Strand 2
E
1325 1329anti-parallel
Strand 3
E
1316 1319anti-parallel
Strand 4
E
1306 1309anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1028 1031first strand
Strand 2
E
1038 1041anti-parallel
Strand 3
E
1046 1049anti-parallel
Strand 4
E
1056 1060anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1070 1076first strand
Strand 2
E
1083 1088anti-parallel
Strand 3
E
1092 1097anti-parallel
Strand 4
E
1107 1113anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1127 1131first strand
Strand 2
E
1137 1142anti-parallel
Strand 3
E
1146 1151anti-parallel
Strand 4
E
1156 1162anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1169 1173first strand
Strand 2
E
1181 1185anti-parallel
Strand 3
E
1190 1193anti-parallel
Strand 4
E
1203 1207anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1214 1218first strand
Strand 2
E
1227 1231anti-parallel
Strand 3
E
1235 1240anti-parallel
Strand 4
E
1243 1251anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1259 1260first strand
Strand 2
E
1267 1270anti-parallel
Strand 3
E
1276 1281anti-parallel
Strand 4
E
1288 1291anti-parallel
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