Analysis of interatomic Contacts of Structural Units in PDB entry:
9F48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F48 entry

There are 2 chains in PDB entry 9F48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 106	PHE 1073
B	GLU 106	PHE 1073

There are 76 helices in PDB entry 9F48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	134	145	Right-handed alpha
Helix 2	AA2	A	165	172	Right-handed alpha
Helix 3	AA3	A	194	199	Right-handed alpha
Helix 4	AA4	A	202	219	Right-handed alpha
Helix 5	AA5	A	222	227	Right-handed 310
Helix 6	AA6	A	241	247	Right-handed alpha
Helix 7	AA7	A	264	274	Right-handed alpha
Helix 8	AA8	A	285	287	Right-handed 310
Helix 9	AA9	A	288	304	Right-handed alpha
Helix 10	AB1	A	319	328	Right-handed alpha
Helix 11	AB2	A	363	370	Right-handed alpha
Helix 12	AB3	A	395	410	Right-handed alpha
Helix 13	AB4	A	413	417	Right-handed 310
Helix 14	AB5	A	429	442	Right-handed alpha
Helix 15	AB6	A	457	462	Right-handed alpha
Helix 16	AB7	A	464	466	Right-handed 310
Helix 17	AB8	A	467	483	Right-handed alpha
Helix 18	AB9	A	601	618	Right-handed alpha
Helix 19	AC1	A	633	649	Right-handed alpha
Helix 20	AC2	A	657	667	Right-handed alpha
Helix 21	AC3	A	681	695	Right-handed alpha
Helix 22	AC4	A	734	752	Right-handed alpha
Helix 23	AC5	A	755	762	Right-handed alpha
Helix 24	AC6	A	768	790	Right-handed alpha
Helix 25	AC7	A	803	811	Right-handed alpha
Helix 26	AC8	A	815	836	Right-handed alpha
Helix 27	AC9	A	851	858	Right-handed alpha
Helix 28	AD1	A	881	896	Right-handed alpha
Helix 29	AD2	A	910	915	Right-handed 310
Helix 30	AD3	A	916	923	Right-handed alpha
Helix 31	AD4	A	955	965	Right-handed alpha
Helix 32	AD5	A	968	979	Right-handed alpha
Helix 33	AD6	A	992	1005	Right-handed alpha
Helix 34	AD7	A	1020	1036	Right-handed alpha
Helix 35	AD8	A	1040	1045	Right-handed 310
Helix 36	AD9	A	1050	1054	Right-handed 310
Helix 37	AE1	B	136	145	Right-handed alpha
Helix 38	AE2	B	163	171	Right-handed alpha
Helix 39	AE3	B	194	199	Right-handed alpha
Helix 40	AE4	B	203	220	Right-handed alpha
Helix 41	AE5	B	222	226	Right-handed 310
Helix 42	AE6	B	241	247	Right-handed alpha
Helix 43	AE7	B	257	262	Right-handed alpha
Helix 44	AE8	B	264	274	Right-handed alpha
Helix 45	AE9	B	285	287	Right-handed 310
Helix 46	AF1	B	288	303	Right-handed alpha
Helix 47	AF2	B	319	328	Right-handed alpha
Helix 48	AF3	B	363	369	Right-handed alpha
Helix 49	AF4	B	395	411	Right-handed alpha
Helix 50	AF5	B	413	417	Right-handed 310
Helix 51	AF6	B	429	442	Right-handed alpha
Helix 52	AF7	B	457	462	Right-handed alpha
Helix 53	AF8	B	464	466	Right-handed 310
Helix 54	AF9	B	467	479	Right-handed alpha
Helix 55	AG1	B	543	547	Right-handed 310
Helix 56	AG2	B	601	616	Right-handed alpha
Helix 57	AG3	B	633	648	Right-handed alpha
Helix 58	AG4	B	650	656	Right-handed alpha
Helix 59	AG5	B	657	667	Right-handed alpha
Helix 60	AG6	B	681	695	Right-handed alpha
Helix 61	AG7	B	728	733	Right-handed alpha
Helix 62	AG8	B	734	752	Right-handed alpha
Helix 63	AG9	B	755	762	Right-handed alpha
Helix 64	AH1	B	768	790	Right-handed alpha
Helix 65	AH2	B	801	803	Right-handed 310
Helix 66	AH3	B	804	810	Right-handed alpha
Helix 67	AH4	B	815	837	Right-handed alpha
Helix 68	AH5	B	851	857	Right-handed alpha
Helix 69	AH6	B	881	894	Right-handed alpha
Helix 70	AH7	B	915	925	Right-handed alpha
Helix 71	AH8	B	955	965	Right-handed alpha
Helix 72	AH9	B	968	978	Right-handed alpha
Helix 73	AI1	B	992	1004	Right-handed alpha
Helix 74	AI2	B	1020	1036	Right-handed alpha
Helix 75	AI3	B	1040	1044	Right-handed 310
Helix 76	AI4	B	1050	1054	Right-handed 310

There are 11 sheets in PDB entry 9F48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	528	first strand
Strand 2	A	533	540	anti-parallel
Strand 3	A	375	384	anti-parallel
Strand 4	A	119	124	anti-parallel
Strand 5	A	356	362	anti-parallel
Strand 6	A	308	313	anti-parallel
Strand 7	A	231	236	parallel
Strand 8	A	280	284	parallel
Strand 9	B	280	284	anti-parallel
Strand 10	B	231	236	parallel
Strand 11	B	308	315	parallel
Strand 12	B	354	362	anti-parallel
Strand 13	B	119	126	anti-parallel
Strand 14	B	375	383	anti-parallel
Strand 15	B	534	540	anti-parallel
Strand 16	B	522	528	anti-parallel
Strand 17	B	419	421	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	1065	1066	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	506	507	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	631	first strand
Strand 2	A	673	679	anti-parallel
Strand 3	A	701	704	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	936	first strand
Strand 2	A	796	798	parallel
Strand 3	A	713	715	parallel
Strand 4	A	983	986	parallel
Strand 5	A	1010	1013	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	844	848	first strand
Strand 2	A	876	880	anti-parallel
Strand 3	A	866	869	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	177	178	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	505	507	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	625	631	first strand
Strand 2	B	673	679	anti-parallel
Strand 3	B	701	703	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	944	946	first strand
Strand 2	B	935	938	anti-parallel
Strand 3	B	796	799	parallel
Strand 4	B	713	716	parallel
Strand 5	B	983	986	parallel
Strand 6	B	1010	1013	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	848	first strand
Strand 2	B	876	879	anti-parallel
Strand 3	B	866	869	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F48

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F48