Analysis of interatomic Contacts of Structural Units in PDB entry:
9F5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F5H entry

There are 2 chains in PDB entry 9F5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 214LEU 728
B
 SER 214LEU 728
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 9F5H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
222 230Right-handed alpha
Helix 2
AA2
A
231 234Right-handed 310
Helix 3
AA3
A
235 245Right-handed alpha
Helix 4
AA4
A
245 260Right-handed alpha
Helix 5
AA5
A
275 282Right-handed 310
Helix 6
AA6
A
284 289Right-handed alpha
Helix 7
AA7
A
295 312Right-handed alpha
Helix 8
AA8
A
320 330Right-handed alpha
Helix 9
AA9
A
340 351Right-handed alpha
Helix 10
AB1
A
352 359Right-handed 310
Helix 11
AB2
A
370 375Right-handed alpha
Helix 12
AB3
A
375 382Right-handed alpha
Helix 13
AB4
A
394 396Right-handed 310
Helix 14
AB5
A
420 426Right-handed alpha
Helix 15
AB6
A
426 431Right-handed alpha
Helix 16
AB7
A
442 447Right-handed 310
Helix 17
AB8
A
449 458Right-handed alpha
Helix 18
AB9
A
485 495Right-handed alpha
Helix 19
AC1
A
509 517Right-handed alpha
Helix 20
AC2
A
535 539Right-handed 310
Helix 21
AC3
A
551 558Right-handed alpha
Helix 22
AC4
A
570 584Right-handed alpha
Helix 23
AC5
A
591 594Right-handed 310
Helix 24
AC6
A
595 610Right-handed alpha
Helix 25
AC7
A
621 625Right-handed 310
Helix 26
AC8
A
635 643Right-handed alpha
Helix 27
AC9
A
649 656Right-handed 310
Helix 28
AD1
A
657 664Right-handed alpha
Helix 29
AD2
A
694 698Right-handed 310
Helix 30
AD3
A
724 728Right-handed 310
Helix 31
AD4
B
222 229Right-handed alpha
Helix 32
AD5
B
232 260Right-handed alpha
Helix 33
AD6
B
275 278Right-handed 310
Helix 34
AD7
B
295 311Right-handed alpha
Helix 35
AD8
B
320 330Right-handed alpha
Helix 36
AD9
B
340 351Right-handed alpha
Helix 37
AE1
B
352 359Right-handed 310
Helix 38
AE2
B
370 375Right-handed alpha
Helix 39
AE3
B
375 382Right-handed alpha
Helix 40
AE4
B
394 396Right-handed 310
Helix 41
AE5
B
420 426Right-handed alpha
Helix 42
AE6
B
426 431Right-handed alpha
Helix 43
AE7
B
442 447Right-handed 310
Helix 44
AE8
B
449 458Right-handed alpha
Helix 45
AE9
B
485 496Right-handed alpha
Helix 46
AF1
B
509 517Right-handed alpha
Helix 47
AF2
B
535 539Right-handed 310
Helix 48
AF3
B
551 558Right-handed alpha
Helix 49
AF4
B
570 583Right-handed alpha
Helix 50
AF5
B
591 594Right-handed 310
Helix 51
AF6
B
595 610Right-handed alpha
Helix 52
AF7
B
621 625Right-handed 310
Helix 53
AF8
B
635 643Right-handed alpha
Helix 54
AF9
B
649 656Right-handed 310
Helix 55
AG1
B
657 664Right-handed alpha
Helix 56
AG2
B
694 698Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 9F5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 318first strand
Strand 2
A
269 273parallel
Strand 3
A
335 339parallel
Strand 4
A
361 364parallel
Strand 5
A
398 400parallel
Strand 6
A
409 410parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 480first strand
Strand 2
A
461 464parallel
Strand 3
A
432 438parallel
Strand 4
A
496 500parallel
Strand 5
A
520 530parallel
Strand 6
A
547 549anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 480first strand
Strand 2
A
461 464parallel
Strand 3
A
432 438parallel
Strand 4
A
496 500parallel
Strand 5
A
520 530parallel
Strand 6
A
563 566parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 630first strand
Strand 2
A
708 714anti-parallel
Strand 3
A
646 647anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 630first strand
Strand 2
A
708 714anti-parallel
Strand 3
A
681 683anti-parallel
Strand 4
A
688 692anti-parallel
Strand 5
A
670 674parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 318first strand
Strand 2
B
269 273parallel
Strand 3
B
335 339parallel
Strand 4
B
361 364parallel
Strand 5
B
398 400parallel
Strand 6
B
409 410parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 480first strand
Strand 2
B
461 464parallel
Strand 3
B
435 438parallel
Strand 4
B
498 500parallel
Strand 5
B
520 530parallel
Strand 6
B
547 549anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 480first strand
Strand 2
B
461 464parallel
Strand 3
B
435 438parallel
Strand 4
B
498 500parallel
Strand 5
B
520 530parallel
Strand 6
B
563 566parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
626 630first strand
Strand 2
B
708 714anti-parallel
Strand 3
B
646 647anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
626 630first strand
Strand 2
B
708 714anti-parallel
Strand 3
B
681 683anti-parallel
Strand 4
B
688 692anti-parallel
Strand 5
B
670 674parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il