Analysis of interatomic Contacts of Structural Units in PDB entry:
9F5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F5P entry

There are 3 chains in PDB entry 9F5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 24	TYR 301
B	ASN 26	GLN 340
C	GLY 1	ALA 235

There are 20 helices in PDB entry 9F5P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	50	Right-handed 310
Helix 2	AA2	A	56	61	Right-handed alpha
Helix 3	AA3	A	72	75	Right-handed 310
Helix 4	AA4	A	76	82	Right-handed alpha
Helix 5	AA5	A	116	123	Right-handed alpha
Helix 6	AA6	A	172	177	Right-handed 310
Helix 7	AA7	A	232	236	Right-handed 310
Helix 8	AA8	B	35	39	Right-handed 310
Helix 9	AA9	B	104	106	Right-handed 310
Helix 10	AB1	B	112	116	Right-handed 310
Helix 11	AB2	B	125	129	Right-handed 310
Helix 12	AB3	B	152	156	Right-handed 310
Helix 13	AB4	B	158	167	Right-handed alpha
Helix 14	AB5	B	212	217	Right-handed alpha
Helix 15	AB6	B	254	261	Right-handed 310
Helix 16	AB7	C	42	48	Right-handed alpha
Helix 17	AB8	C	64	67	Right-handed 310
Helix 18	AB9	C	92	97	Right-handed alpha
Helix 19	AC1	C	98	105	Right-handed alpha
Helix 20	AC2	C	144	149	Right-handed alpha

There are 11 sheets in PDB entry 9F5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	C	163	168	anti-parallel
Strand 3	C	114	120	anti-parallel
Strand 4	C	207	216	anti-parallel
Strand 5	C	51	52	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	C	163	168	anti-parallel
Strand 3	C	114	120	anti-parallel
Strand 4	C	207	216	anti-parallel
Strand 5	C	69	73	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	94	first strand
Strand 2	A	253	271	anti-parallel
Strand 3	A	125	142	anti-parallel
Strand 4	A	205	206	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	125	142	anti-parallel
Strand 3	A	253	271	anti-parallel
Strand 4	C	39	40	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	109	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	154	160	anti-parallel
Strand 4	A	182	186	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	87	first strand
Strand 2	B	90	94	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	273	278	parallel
Strand 3	B	168	180	anti-parallel
Strand 4	B	315	331	anti-parallel
Strand 5	B	133	134	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	273	278	parallel
Strand 3	B	168	180	anti-parallel
Strand 4	B	315	331	anti-parallel
Strand 5	B	138	140	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	295	307	anti-parallel
Strand 4	B	187	197	anti-parallel
Strand 5	B	263	267	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	C	189	199	anti-parallel
Strand 3	C	127	135	anti-parallel
Strand 4	C	152	158	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	107	111	anti-parallel
Strand 3	C	221	225	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F5P