Analysis of interatomic Contacts of Structural Units in PDB entry:
9F5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F5T entry

There are 4 chains in PDB entry 9F5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 15ARG 218
B
 GLY 76GLY 152
C
 SER 16ARG 218
D
 GLY 76GLY 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 9F5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
68 79Right-handed alpha
Helix 3
AA3
A
84 97Right-handed alpha
Helix 4
AA4
A
99 111Right-handed alpha
Helix 5
AA5
A
113 122Right-handed alpha
Helix 6
AA6
A
136 148Right-handed alpha
Helix 7
AA7
A
149 151Right-handed 310
Helix 8
AA8
A
184 188Right-handed 310
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
B
98 111Right-handed alpha
Helix 11
AB2
B
113 115Right-handed 310
Helix 12
AB3
C
17 25Right-handed alpha
Helix 13
AB4
C
68 79Right-handed alpha
Helix 14
AB5
C
84 97Right-handed alpha
Helix 15
AB6
C
99 111Right-handed alpha
Helix 16
AB7
C
113 124Right-handed alpha
Helix 17
AB8
C
136 148Right-handed alpha
Helix 18
AB9
C
149 151Right-handed 310
Helix 19
AC1
C
184 188Right-handed 310
Helix 20
AC2
C
198 205Right-handed alpha
Helix 21
AC3
D
98 111Right-handed alpha
Helix 22
AC4
D
113 115Right-handed 310
Helix 23
AC5
D
131 136Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 9F5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 43first strand
Strand 2
A
59 62anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
213 218anti-parallel
Strand 3
A
153 158anti-parallel
Strand 4
A
166 172anti-parallel
Strand 5
A
178 181anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 93first strand
Strand 2
B
77 83anti-parallel
Strand 3
B
142 147parallel
Strand 4
B
117 121anti-parallel
Strand 5
B
124 125anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 43first strand
Strand 2
C
59 62anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 135first strand
Strand 2
C
213 218anti-parallel
Strand 3
C
153 158anti-parallel
Strand 4
C
166 172anti-parallel
Strand 5
C
178 181anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 93first strand
Strand 2
D
77 83anti-parallel
Strand 3
D
142 147parallel
Strand 4
D
117 121anti-parallel
Strand 5
D
124 125anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il