Analysis of interatomic Contacts of Structural Units in PDB entry:
9F5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F5W entry

There are 6 chains in PDB entry 9F5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 1161
B	ASN 55	ASN 1278
D	VAL 2	GLN 1260
H	GLN 13	THR 586
M	HIS 986	PHE 990
G	LEU 170	MET 637

There are130 helices in PDB entry 9F5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	49	Right-handed alpha
Helix 2	AA2	A	66	71	Right-handed 310
Helix 3	AA3	A	123	135	Right-handed alpha
Helix 4	AA4	A	146	156	Right-handed alpha
Helix 5	AA5	A	157	169	Right-handed alpha
Helix 6	AA6	A	171	260	Right-handed alpha
Helix 7	AA7	A	910	923	Right-handed alpha
Helix 8	AA8	A	931	939	Right-handed alpha
Helix 9	AA9	A	966	974	Right-handed alpha
Helix 10	AB1	A	980	985	Right-handed alpha
Helix 11	AB2	A	988	1049	Right-handed alpha
Helix 12	AB3	A	1086	1105	Right-handed alpha
Helix 13	AB4	A	1120	1135	Right-handed alpha
Helix 14	AB5	A	1147	1152	Right-handed alpha
Helix 15	AB6	B	57	64	Right-handed alpha
Helix 16	AB7	B	118	130	Right-handed alpha
Helix 17	AB8	B	205	216	Right-handed alpha
Helix 18	AB9	B	228	236	Right-handed alpha
Helix 19	AC1	B	249	258	Right-handed alpha
Helix 20	AC2	B	264	289	Right-handed alpha
Helix 21	AC3	B	292	347	Right-handed alpha
Helix 22	AC4	B	1017	1033	Right-handed alpha
Helix 23	AC5	B	1034	1038	Right-handed 310
Helix 24	AC6	B	1068	1085	Right-handed alpha
Helix 25	AC7	B	1090	1099	Right-handed alpha
Helix 26	AC8	B	1101	1155	Right-handed alpha
Helix 27	AC9	B	1192	1211	Right-handed alpha
Helix 28	AD1	B	1226	1241	Right-handed alpha
Helix 29	AD2	B	1253	1258	Right-handed alpha
Helix 30	AD3	D	3	12	Right-handed alpha
Helix 31	AD4	D	20	30	Right-handed alpha
Helix 32	AD5	D	39	48	Right-handed alpha
Helix 33	AD6	D	50	67	Right-handed alpha
Helix 34	AD7	D	74	82	Right-handed alpha
Helix 35	AD8	D	85	102	Right-handed alpha
Helix 36	AD9	D	106	125	Right-handed alpha
Helix 37	AE1	D	129	133	Right-handed 310
Helix 38	AE2	D	136	150	Right-handed alpha
Helix 39	AE3	D	208	227	Right-handed alpha
Helix 40	AE4	D	236	251	Right-handed alpha
Helix 41	AE5	D	272	284	Right-handed alpha
Helix 42	AE6	D	291	308	Right-handed alpha
Helix 43	AE7	D	324	346	Right-handed alpha
Helix 44	AE8	D	348	363	Right-handed alpha
Helix 45	AE9	D	367	385	Right-handed alpha
Helix 46	AF1	D	386	401	Right-handed alpha
Helix 47	AF2	D	405	422	Right-handed alpha
Helix 48	AF3	D	432	437	Right-handed alpha
Helix 49	AF4	D	440	454	Right-handed alpha
Helix 50	AF5	D	457	478	Right-handed alpha
Helix 51	AF6	D	480	489	Right-handed alpha
Helix 52	AF7	D	541	550	Right-handed alpha
Helix 53	AF8	D	554	568	Right-handed alpha
Helix 54	AF9	D	577	589	Right-handed alpha
Helix 55	AG1	D	592	610	Right-handed alpha
Helix 56	AG2	D	613	625	Right-handed alpha
Helix 57	AG3	D	633	647	Right-handed alpha
Helix 58	AG4	D	661	673	Right-handed alpha
Helix 59	AG5	D	680	695	Right-handed alpha
Helix 60	AG6	D	699	709	Right-handed alpha
Helix 61	AG7	D	714	726	Right-handed alpha
Helix 62	AG8	D	734	747	Right-handed alpha
Helix 63	AG9	D	751	765	Right-handed alpha
Helix 64	AH1	D	770	788	Right-handed alpha
Helix 65	AH2	D	791	810	Right-handed alpha
Helix 66	AH3	D	812	839	Right-handed alpha
Helix 67	AH4	D	849	867	Right-handed alpha
Helix 68	AH5	D	868	871	Right-handed 310
Helix 69	AH6	D	872	885	Right-handed alpha
Helix 70	AH7	D	918	934	Right-handed alpha
Helix 71	AH8	D	934	950	Right-handed alpha
Helix 72	AH9	D	954	972	Right-handed alpha
Helix 73	AI1	D	972	977	Right-handed alpha
Helix 74	AI2	D	979	987	Right-handed alpha
Helix 75	AI3	D	991	1009	Right-handed alpha
Helix 76	AI4	D	1014	1024	Right-handed alpha
Helix 77	AI5	D	1025	1027	Right-handed 310
Helix 78	AI6	D	1029	1043	Right-handed alpha
Helix 79	AI7	D	1043	1048	Right-handed alpha
Helix 80	AI8	D	1050	1064	Right-handed alpha
Helix 81	AI9	D	1078	1085	Right-handed alpha
Helix 82	AJ1	D	1092	1107	Right-handed alpha
Helix 83	AJ2	D	1108	1130	Right-handed alpha
Helix 84	AJ3	D	1135	1150	Right-handed alpha
Helix 85	AJ4	D	1151	1155	Right-handed 310
Helix 86	AJ5	D	1179	1216	Right-handed alpha
Helix 87	AJ6	D	1219	1232	Right-handed alpha
Helix 88	AJ7	D	1236	1245	Right-handed alpha
Helix 89	AJ8	D	1248	1260	Right-handed alpha
Helix 90	AJ9	H	14	21	Right-handed alpha
Helix 91	AK1	H	53	60	Right-handed alpha
Helix 92	AK2	H	61	63	Right-handed 310
Helix 93	AK3	H	66	88	Right-handed alpha
Helix 94	AK4	H	149	153	Right-handed 310
Helix 95	AK5	H	156	163	Right-handed alpha
Helix 96	AK6	H	177	179	Right-handed 310
Helix 97	AK7	H	362	367	Right-handed alpha
Helix 98	AK8	H	495	511	Right-handed alpha
Helix 99	AK9	H	516	528	Right-handed alpha
Helix 100	AL1	H	536	541	Right-handed alpha
Helix 101	AL2	H	545	562	Right-handed alpha
Helix 102	AL3	G	171	178	Right-handed alpha
Helix 103	AL4	G	179	189	Right-handed alpha
Helix 104	AL5	G	189	195	Right-handed alpha
Helix 105	AL6	G	200	216	Right-handed alpha
Helix 106	AL7	G	216	222	Right-handed alpha
Helix 107	AL8	G	222	236	Right-handed alpha
Helix 108	AL9	G	238	250	Right-handed alpha
Helix 109	AM1	G	255	273	Right-handed alpha
Helix 110	AM2	G	275	283	Right-handed alpha
Helix 111	AM3	G	285	296	Right-handed alpha
Helix 112	AM4	G	300	317	Right-handed alpha
Helix 113	AM5	G	322	340	Right-handed alpha
Helix 114	AM6	G	343	358	Right-handed alpha
Helix 115	AM7	G	366	386	Right-handed alpha
Helix 116	AM8	G	389	407	Right-handed alpha
Helix 117	AM9	G	412	426	Right-handed alpha
Helix 118	AN1	G	427	430	Right-handed 310
Helix 119	AN2	G	434	444	Right-handed alpha
Helix 120	AN3	G	445	447	Right-handed 310
Helix 121	AN4	G	453	460	Right-handed alpha
Helix 122	AN5	G	461	470	Right-handed 310
Helix 123	AN6	G	472	490	Right-handed alpha
Helix 124	AN7	G	493	498	Right-handed alpha
Helix 125	AN8	G	499	509	Right-handed alpha
Helix 126	AN9	G	511	527	Right-handed alpha
Helix 127	AO1	G	532	546	Right-handed alpha
Helix 128	AO2	G	548	562	Right-handed alpha
Helix 129	AO3	G	563	576	Right-handed alpha
Helix 130	AO4	G	615	635	Right-handed alpha

There are 14 sheets in PDB entry 9F5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	18	20	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	1143	1144	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	104	108	anti-parallel
Strand 3	A	113	117	anti-parallel
Strand 4	A	120	121	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	100	101	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1052	1057	first strand
Strand 2	A	1069	1074	anti-parallel
Strand 3	A	1077	1078	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1109	1111	first strand
Strand 2	A	1139	1141	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	81	90	anti-parallel
Strand 3	B	157	167	anti-parallel
Strand 4	B	177	190	anti-parallel
Strand 5	B	195	199	anti-parallel
Strand 6	B	202	204	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1163	first strand
Strand 2	B	1174	1178	anti-parallel
Strand 3	B	1186	1187	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1215	1219	first strand
Strand 2	B	1245	1249	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1262	1268	first strand
Strand 2	B	1271	1277	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	42	first strand
Strand 2	H	51	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	166	first strand
Strand 2	H	172	175	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	186	first strand
Strand 2	H	192	193	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	565	567	first strand
Strand 2	H	582	584	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F5W