Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F6A entry

There are 3 chains in PDB entry 9F6A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12GLN 323
B
 GLY 1GLN 242
C
 ARG 3LEU 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9F6A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 39Right-handed 310
Helix 2
AA2
A
66 70Right-handed 310
Helix 3
AA3
A
72 77Right-handed alpha
Helix 4
AA4
A
104 106Right-handed 310
Helix 5
AA5
A
152 156Right-handed 310
Helix 6
AA6
A
158 167Right-handed alpha
Helix 7
AA7
A
216 221Right-handed alpha
Helix 8
AA8
A
241 247Right-handed 310
Helix 9
AA9
B
42 48Right-handed alpha
Helix 10
AB1
B
61 70Right-handed 310
Helix 11
AB2
B
94 98Right-handed 310
Helix 12
AB3
B
99 106Right-handed alpha
Helix 13
AB4
B
145 150Right-handed alpha
Helix 14
AB5
B
184 190Right-handed 310
Helix 15
AB6
C
75 78Right-handed 310
Helix 16
AB7
C
79 84Right-handed alpha
Helix 17
AB8
C
112 115Right-handed 310
Helix 18
AB9
C
116 124Right-handed alpha
Helix 19
AC1
C
168 173Right-handed 310
Helix 20
AC2
C
218 222Right-handed 310
Helix 21
AC3
C
280 284Right-handed 310
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There are 10 sheets in PDB entry 9F6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
90 91anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
259 264parallel
Strand 3
A
168 181anti-parallel
Strand 4
A
301 317anti-parallel
Strand 5
A
133 140anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
147 151anti-parallel
Strand 3
A
281 292anti-parallel
Strand 4
A
188 197anti-parallel
Strand 5
A
249 251anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
C
188 192parallel
Strand 3
C
128 140anti-parallel
Strand 4
C
247 260anti-parallel
Strand 5
C
88 95anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
C
188 192parallel
Strand 3
C
128 140anti-parallel
Strand 4
C
201 202anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
211 220anti-parallel
Strand 3
B
71 74anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
211 220anti-parallel
Strand 3
B
115 121anti-parallel
Strand 4
B
164 169anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 87first strand
Strand 2
B
193 203anti-parallel
Strand 3
B
128 136anti-parallel
Strand 4
B
153 158anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
108 112anti-parallel
Strand 3
B
225 229anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 110first strand
Strand 2
C
232 237anti-parallel
Strand 3
C
150 156anti-parallel
Strand 4
C
178 182anti-parallel
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