Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F6D entry

There are 6 chains in PDB entry 9F6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 27	MET 1197
B	MET 1	SER 261
C	MET 1	GLU 258
D	MET 1	GLU 259
P	C 1	C 23
T	G 11	G 38

There are 63 helices in PDB entry 9F6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	48	Right-handed alpha
Helix 2	AA2	A	112	124	Right-handed alpha
Helix 3	AA3	A	143	147	Right-handed 310
Helix 4	AA4	A	159	181	Right-handed alpha
Helix 5	AA5	A	214	217	Right-handed alpha
Helix 6	AA6	A	227	237	Right-handed alpha
Helix 7	AA7	A	339	355	Right-handed alpha
Helix 8	AA8	A	367	379	Right-handed alpha
Helix 9	AA9	A	382	387	Right-handed alpha
Helix 10	AB1	A	407	415	Right-handed alpha
Helix 11	AB2	A	418	422	Right-handed 310
Helix 12	AB3	A	423	433	Right-handed alpha
Helix 13	AB4	A	443	451	Right-handed alpha
Helix 14	AB5	A	451	473	Right-handed alpha
Helix 15	AB6	A	473	483	Right-handed alpha
Helix 16	AB7	A	488	495	Right-handed alpha
Helix 17	AB8	A	496	512	Right-handed alpha
Helix 18	AB9	A	563	584	Right-handed alpha
Helix 19	AC1	A	589	593	Right-handed 310
Helix 20	AC2	A	595	613	Right-handed alpha
Helix 21	AC3	A	629	639	Right-handed alpha
Helix 22	AC4	A	647	652	Right-handed alpha
Helix 23	AC5	A	679	690	Right-handed alpha
Helix 24	AC6	A	708	710	Right-handed 310
Helix 25	AC7	A	711	731	Right-handed alpha
Helix 26	AC8	A	752	786	Right-handed alpha
Helix 27	AC9	A	787	819	Right-handed alpha
Helix 28	AD1	A	829	854	Right-handed alpha
Helix 29	AD2	A	892	905	Right-handed alpha
Helix 30	AD3	A	979	994	Right-handed alpha
Helix 31	AD4	A	998	1019	Right-handed alpha
Helix 32	AD5	A	1025	1034	Right-handed alpha
Helix 33	AD6	A	1051	1065	Right-handed alpha
Helix 34	AD7	A	1065	1070	Right-handed alpha
Helix 35	AD8	A	1088	1091	Right-handed 310
Helix 36	AD9	A	1097	1100	Right-handed 310
Helix 37	AE1	A	1102	1114	Right-handed alpha
Helix 38	AE2	A	1123	1128	Right-handed alpha
Helix 39	AE3	A	1129	1145	Right-handed alpha
Helix 40	AE4	A	1146	1152	Right-handed alpha
Helix 41	AE5	A	1164	1176	Right-handed alpha
Helix 42	AE6	A	1182	1186	Right-handed 310
Helix 43	AE7	B	9	20	Right-handed alpha
Helix 44	AE8	B	55	57	Right-handed 310
Helix 45	AE9	B	72	80	Right-handed alpha
Helix 46	AF1	B	141	155	Right-handed alpha
Helix 47	AF2	B	190	194	Right-handed 310
Helix 48	AF3	B	209	216	Right-handed alpha
Helix 49	AF4	B	217	219	Right-handed 310
Helix 50	AF5	B	258	260	Right-handed 310
Helix 51	AF6	C	9	21	Right-handed alpha
Helix 52	AF7	C	72	80	Right-handed alpha
Helix 53	AF8	C	141	155	Right-handed alpha
Helix 54	AF9	C	190	194	Right-handed 310
Helix 55	AG1	C	209	216	Right-handed alpha
Helix 56	AG2	C	217	222	Right-handed 310
Helix 57	AG3	D	9	23	Right-handed alpha
Helix 58	AG4	D	55	57	Right-handed 310
Helix 59	AG5	D	72	80	Right-handed alpha
Helix 60	AG6	D	141	155	Right-handed alpha
Helix 61	AG7	D	190	194	Right-handed 310
Helix 62	AG8	D	209	216	Right-handed alpha
Helix 63	AG9	D	217	222	Right-handed 310

There are 20 sheets in PDB entry 9F6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	99	first strand
Strand 2	A	78	87	anti-parallel
Strand 3	A	57	72	anti-parallel
Strand 4	A	243	248	anti-parallel
Strand 5	A	256	259	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	136	first strand
Strand 2	A	150	156	anti-parallel
Strand 3	A	103	108	anti-parallel
Strand 4	A	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	331	337	anti-parallel
Strand 3	A	303	309	parallel
Strand 4	A	293	300	anti-parallel
Strand 5	A	271	278	anti-parallel
Strand 6	A	358	360	parallel
Strand 7	A	403	405	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	397	398	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	539	first strand
Strand 2	A	664	675	anti-parallel
Strand 3	A	736	747	anti-parallel
Strand 4	A	645	646	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	546	first strand
Strand 2	A	855	859	anti-parallel
Strand 3	A	863	869	anti-parallel
Strand 4	A	620	627	anti-parallel
Strand 5	A	931	937	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	939	942	anti-parallel
Strand 3	A	956	959	anti-parallel
Strand 4	A	965	969	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	560	first strand
Strand 2	A	616	618	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	695	first strand
Strand 2	A	705	706	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	875	879	first strand
Strand 2	A	887	891	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	907	913	first strand
Strand 2	A	921	926	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1078	1080	first strand
Strand 2	A	1093	1095	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1178	1180	first strand
Strand 2	B	254	256	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1189	1195	first strand
Strand 2	B	121	126	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	98	104	anti-parallel
Strand 5	B	111	117	anti-parallel
Strand 6	C	178	183	anti-parallel
Strand 7	C	166	171	anti-parallel
Strand 8	C	157	163	anti-parallel
Strand 9	C	203	208	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	25	31	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	46	53	anti-parallel
Strand 5	B	245	251	anti-parallel
Strand 6	B	235	241	anti-parallel
Strand 7	B	224	229	anti-parallel
Strand 8	B	135	140	anti-parallel
Strand 9	B	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	208	first strand
Strand 2	B	157	163	anti-parallel
Strand 3	B	166	173	anti-parallel
Strand 4	B	176	183	anti-parallel
Strand 5	D	110	117	anti-parallel
Strand 6	D	98	104	anti-parallel
Strand 7	D	87	92	anti-parallel
Strand 8	D	2	6	anti-parallel
Strand 9	D	59	62	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	98	104	anti-parallel
Strand 5	C	110	117	anti-parallel
Strand 6	D	176	183	anti-parallel
Strand 7	D	166	173	anti-parallel
Strand 8	D	157	162	anti-parallel
Strand 9	D	204	208	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	25	31	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	46	52	anti-parallel
Strand 5	C	245	251	anti-parallel
Strand 6	C	233	241	anti-parallel
Strand 7	C	224	230	anti-parallel
Strand 8	C	135	140	anti-parallel
Strand 9	C	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	25	31	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	47	53	anti-parallel
Strand 5	D	245	251	anti-parallel
Strand 6	D	233	241	anti-parallel
Strand 7	D	224	230	anti-parallel
Strand 8	D	135	140	anti-parallel
Strand 9	D	196	199	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6D