Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F6J entry

There are 3 chains in PDB entry 9F6J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 27	ASN 1175
P	T 18	C 31
T	T 4	A 21

There are 45 helices in PDB entry 9F6J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	48	Right-handed alpha
Helix 2	AA2	A	112	124	Right-handed alpha
Helix 3	AA3	A	143	147	Right-handed 310
Helix 4	AA4	A	159	171	Right-handed alpha
Helix 5	AA5	A	171	181	Right-handed alpha
Helix 6	AA6	A	227	236	Right-handed alpha
Helix 7	AA7	A	339	355	Right-handed alpha
Helix 8	AA8	A	367	379	Right-handed alpha
Helix 9	AA9	A	382	387	Right-handed alpha
Helix 10	AB1	A	407	415	Right-handed alpha
Helix 11	AB2	A	418	422	Right-handed 310
Helix 12	AB3	A	423	433	Right-handed alpha
Helix 13	AB4	A	440	442	Right-handed 310
Helix 14	AB5	A	443	451	Right-handed alpha
Helix 15	AB6	A	452	473	Right-handed alpha
Helix 16	AB7	A	473	483	Right-handed alpha
Helix 17	AB8	A	488	495	Right-handed alpha
Helix 18	AB9	A	496	512	Right-handed alpha
Helix 19	AC1	A	565	572	Right-handed alpha
Helix 20	AC2	A	573	584	Right-handed alpha
Helix 21	AC3	A	589	593	Right-handed 310
Helix 22	AC4	A	595	613	Right-handed alpha
Helix 23	AC5	A	629	639	Right-handed alpha
Helix 24	AC6	A	647	652	Right-handed alpha
Helix 25	AC7	A	679	691	Right-handed alpha
Helix 26	AC8	A	708	710	Right-handed 310
Helix 27	AC9	A	711	731	Right-handed alpha
Helix 28	AD1	A	752	786	Right-handed alpha
Helix 29	AD2	A	787	819	Right-handed alpha
Helix 30	AD3	A	829	854	Right-handed alpha
Helix 31	AD4	A	892	906	Right-handed alpha
Helix 32	AD5	A	971	975	Right-handed 310
Helix 33	AD6	A	979	994	Right-handed alpha
Helix 34	AD7	A	998	1020	Right-handed alpha
Helix 35	AD8	A	1027	1034	Right-handed alpha
Helix 36	AD9	A	1042	1047	Right-handed alpha
Helix 37	AE1	A	1051	1065	Right-handed alpha
Helix 38	AE2	A	1065	1070	Right-handed alpha
Helix 39	AE3	A	1088	1091	Right-handed 310
Helix 40	AE4	A	1097	1101	Right-handed 310
Helix 41	AE5	A	1102	1114	Right-handed alpha
Helix 42	AE6	A	1123	1128	Right-handed alpha
Helix 43	AE7	A	1129	1145	Right-handed alpha
Helix 44	AE8	A	1146	1151	Right-handed alpha
Helix 45	AE9	A	1164	1175	Right-handed alpha

There are 12 sheets in PDB entry 9F6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	93	99	parallel
Strand 3	A	78	87	anti-parallel
Strand 4	A	57	72	anti-parallel
Strand 5	A	243	248	anti-parallel
Strand 6	A	256	259	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	136	first strand
Strand 2	A	150	156	anti-parallel
Strand 3	A	103	107	anti-parallel
Strand 4	A	220	222	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	337	first strand
Strand 2	A	303	309	parallel
Strand 3	A	293	300	anti-parallel
Strand 4	A	271	278	anti-parallel
Strand 5	A	358	361	parallel
Strand 6	A	403	406	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	397	398	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	536	first strand
Strand 2	A	664	675	anti-parallel
Strand 3	A	736	747	anti-parallel
Strand 4	A	645	646	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	939	942	anti-parallel
Strand 3	A	956	959	anti-parallel
Strand 4	A	965	969	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	561	first strand
Strand 2	A	615	618	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	855	859	first strand
Strand 2	A	863	869	anti-parallel
Strand 3	A	620	627	anti-parallel
Strand 4	A	931	934	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	695	first strand
Strand 2	A	705	706	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	875	879	first strand
Strand 2	A	887	891	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	907	913	first strand
Strand 2	A	921	926	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1078	1080	first strand
Strand 2	A	1093	1095	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F6J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6J