Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F6K entry

There are 3 chains in PDB entry 9F6K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 27	ASN 1175
P	T 18	C 31
T	T 10	A 21

There are 43 helices in PDB entry 9F6K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	48	Right-handed alpha
Helix 2	AA2	A	112	124	Right-handed alpha
Helix 3	AA3	A	143	147	Right-handed 310
Helix 4	AA4	A	159	181	Right-handed alpha
Helix 5	AA5	A	213	218	Right-handed 310
Helix 6	AA6	A	227	237	Right-handed alpha
Helix 7	AA7	A	339	355	Right-handed alpha
Helix 8	AA8	A	367	375	Right-handed alpha
Helix 9	AA9	A	376	380	Right-handed 310
Helix 10	AB1	A	382	387	Right-handed alpha
Helix 11	AB2	A	407	415	Right-handed alpha
Helix 12	AB3	A	423	433	Right-handed alpha
Helix 13	AB4	A	440	451	Right-handed alpha
Helix 14	AB5	A	451	460	Right-handed alpha
Helix 15	AB6	A	460	473	Right-handed alpha
Helix 16	AB7	A	473	483	Right-handed alpha
Helix 17	AB8	A	488	495	Right-handed alpha
Helix 18	AB9	A	496	512	Right-handed alpha
Helix 19	AC1	A	567	572	Right-handed alpha
Helix 20	AC2	A	573	586	Right-handed alpha
Helix 21	AC3	A	589	593	Right-handed 310
Helix 22	AC4	A	595	613	Right-handed alpha
Helix 23	AC5	A	629	639	Right-handed alpha
Helix 24	AC6	A	648	653	Right-handed 310
Helix 25	AC7	A	679	691	Right-handed alpha
Helix 26	AC8	A	711	731	Right-handed alpha
Helix 27	AC9	A	752	786	Right-handed alpha
Helix 28	AD1	A	787	819	Right-handed alpha
Helix 29	AD2	A	828	854	Right-handed alpha
Helix 30	AD3	A	892	906	Right-handed alpha
Helix 31	AD4	A	979	993	Right-handed alpha
Helix 32	AD5	A	998	1020	Right-handed alpha
Helix 33	AD6	A	1025	1033	Right-handed alpha
Helix 34	AD7	A	1042	1047	Right-handed 310
Helix 35	AD8	A	1051	1062	Right-handed alpha
Helix 36	AD9	A	1066	1071	Right-handed alpha
Helix 37	AE1	A	1088	1092	Right-handed alpha
Helix 38	AE2	A	1096	1101	Right-handed alpha
Helix 39	AE3	A	1102	1114	Right-handed alpha
Helix 40	AE4	A	1123	1128	Right-handed alpha
Helix 41	AE5	A	1129	1145	Right-handed alpha
Helix 42	AE6	A	1145	1152	Right-handed alpha
Helix 43	AE7	A	1164	1175	Right-handed alpha

There are 12 sheets in PDB entry 9F6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	99	first strand
Strand 2	A	78	87	anti-parallel
Strand 3	A	57	72	anti-parallel
Strand 4	A	243	248	anti-parallel
Strand 5	A	256	259	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	136	first strand
Strand 2	A	150	156	anti-parallel
Strand 3	A	103	106	anti-parallel
Strand 4	A	221	222	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	303	308	parallel
Strand 3	A	293	300	anti-parallel
Strand 4	A	271	278	anti-parallel
Strand 5	A	358	361	parallel
Strand 6	A	403	406	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	397	398	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	539	first strand
Strand 2	A	666	675	anti-parallel
Strand 3	A	736	745	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	546	first strand
Strand 2	A	856	859	anti-parallel
Strand 3	A	863	866	anti-parallel
Strand 4	A	623	626	anti-parallel
Strand 5	A	932	934	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	939	942	anti-parallel
Strand 3	A	956	959	anti-parallel
Strand 4	A	965	969	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	561	first strand
Strand 2	A	615	618	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	695	first strand
Strand 2	A	705	706	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	875	879	first strand
Strand 2	A	887	891	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	907	913	first strand
Strand 2	A	921	926	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1078	1080	first strand
Strand 2	A	1093	1095	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F6K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6K