Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F6L entry

There are 3 chains in PDB entry 9F6L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27ASN 1175
P
 T 18 C 31
T
 T 10 A 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 9F6L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 48Right-handed alpha
Helix 2
AA2
A
112 124Right-handed alpha
Helix 3
AA3
A
143 147Right-handed 310
Helix 4
AA4
A
159 181Right-handed alpha
Helix 5
AA5
A
227 237Right-handed alpha
Helix 6
AA6
A
339 355Right-handed alpha
Helix 7
AA7
A
367 379Right-handed alpha
Helix 8
AA8
A
382 387Right-handed alpha
Helix 9
AA9
A
407 414Right-handed alpha
Helix 10
AB1
A
423 432Right-handed alpha
Helix 11
AB2
A
443 451Right-handed alpha
Helix 12
AB3
A
451 473Right-handed alpha
Helix 13
AB4
A
473 482Right-handed alpha
Helix 14
AB5
A
483 485Right-handed 310
Helix 15
AB6
A
488 495Right-handed alpha
Helix 16
AB7
A
496 512Right-handed alpha
Helix 17
AB8
A
563 571Right-handed alpha
Helix 18
AB9
A
573 584Right-handed alpha
Helix 19
AC1
A
589 593Right-handed 310
Helix 20
AC2
A
595 613Right-handed alpha
Helix 21
AC3
A
629 639Right-handed alpha
Helix 22
AC4
A
647 652Right-handed alpha
Helix 23
AC5
A
679 693Right-handed alpha
Helix 24
AC6
A
706 710Right-handed 310
Helix 25
AC7
A
711 731Right-handed alpha
Helix 26
AC8
A
752 786Right-handed alpha
Helix 27
AC9
A
787 818Right-handed alpha
Helix 28
AD1
A
828 854Right-handed alpha
Helix 29
AD2
A
892 905Right-handed alpha
Helix 30
AD3
A
979 994Right-handed alpha
Helix 31
AD4
A
998 1019Right-handed alpha
Helix 32
AD5
A
1025 1034Right-handed alpha
Helix 33
AD6
A
1042 1047Right-handed 310
Helix 34
AD7
A
1051 1065Right-handed alpha
Helix 35
AD8
A
1066 1069Right-handed 310
Helix 36
AD9
A
1097 1101Right-handed 310
Helix 37
AE1
A
1102 1114Right-handed alpha
Helix 38
AE2
A
1123 1128Right-handed alpha
Helix 39
AE3
A
1129 1145Right-handed alpha
Helix 40
AE4
A
1145 1152Right-handed alpha
Helix 41
AE5
A
1164 1175Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 9F6L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
93 99parallel
Strand 3
A
78 87anti-parallel
Strand 4
A
57 72anti-parallel
Strand 5
A
243 248anti-parallel
Strand 6
A
256 259anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 136first strand
Strand 2
A
150 157anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
218 222anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
331 337anti-parallel
Strand 3
A
303 309parallel
Strand 4
A
293 300anti-parallel
Strand 5
A
271 278anti-parallel
Strand 6
A
358 361parallel
Strand 7
A
403 406parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
397 398anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 539first strand
Strand 2
A
664 675anti-parallel
Strand 3
A
736 747anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
855 860anti-parallel
Strand 3
A
863 869anti-parallel
Strand 4
A
620 627anti-parallel
Strand 5
A
931 937anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
939 942anti-parallel
Strand 3
A
956 959anti-parallel
Strand 4
A
965 969anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 560first strand
Strand 2
A
616 618anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
875 879first strand
Strand 2
A
887 891anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
907 913first strand
Strand 2
A
921 926anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1037 1038first strand
Strand 2
A
1075 1076anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1078 1080first strand
Strand 2
A
1093 1095anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il