Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F6O entry

There are 2 chains in PDB entry 9F6O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 92LEU 562
B
 GLN 1SER 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9F6O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
95 102Right-handed alpha
Helix 2
AA2
A
104 112Right-handed alpha
Helix 3
AA3
A
115 128Right-handed alpha
Helix 4
AA4
A
131 133Right-handed 310
Helix 5
AA5
A
134 158Right-handed alpha
Helix 6
AA6
A
161 168Right-handed alpha
Helix 7
AA7
A
171 205Right-handed alpha
Helix 8
AA8
A
210 218Right-handed alpha
Helix 9
AA9
A
218 232Right-handed alpha
Helix 10
AB1
A
236 259Right-handed alpha
Helix 11
AB2
A
261 271Right-handed alpha
Helix 12
AB3
A
278 293Right-handed alpha
Helix 13
AB4
A
296 308Right-handed alpha
Helix 14
AB5
A
314 351Right-handed alpha
Helix 15
AB6
A
355 367Right-handed alpha
Helix 16
AB7
A
384 430Right-handed alpha
Helix 17
AB8
A
436 459Right-handed alpha
Helix 18
AB9
A
460 478Right-handed alpha
Helix 19
AC1
A
479 482Right-handed 310
Helix 20
AC2
A
483 490Right-handed alpha
Helix 21
AC3
A
492 497Right-handed alpha
Helix 22
AC4
A
502 532Right-handed alpha
Helix 23
AC5
A
535 562Right-handed alpha
Helix 24
AC6
B
28 32Right-handed 310
Helix 25
AC7
B
87 91Right-handed 310
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There are 3 sheets in PDB entry 9F6O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
115 119parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
59 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
115 119parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
108 111anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il