Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F6V entry

There are 2 chains in PDB entry 9F6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ALA 423
D	ALA 2	TYR 423

There are 41 helices in PDB entry 9F6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	29	Right-handed alpha
Helix 2	AA2	A	44	47	Right-handed 310
Helix 3	AA3	A	66	72	Right-handed alpha
Helix 4	AA4	A	72	77	Right-handed alpha
Helix 5	AA5	A	78	81	Right-handed 310
Helix 6	AA6	A	82	84	Right-handed 310
Helix 7	AA7	A	96	103	Right-handed alpha
Helix 8	AA8	A	105	122	Right-handed alpha
Helix 9	AA9	A	138	155	Right-handed alpha
Helix 10	AB1	A	176	192	Right-handed alpha
Helix 11	AB2	A	200	210	Right-handed alpha
Helix 12	AB3	A	217	234	Right-handed alpha
Helix 13	AB4	A	235	237	Right-handed 310
Helix 14	AB5	A	245	254	Right-handed alpha
Helix 15	AB6	A	281	290	Right-handed alpha
Helix 16	AB7	A	300	304	Right-handed 310
Helix 17	AB8	A	318	333	Right-handed alpha
Helix 18	AB9	A	368	384	Right-handed alpha
Helix 19	AC1	A	388	395	Right-handed alpha
Helix 20	AC2	A	398	420	Right-handed alpha
Helix 21	AC3	D	11	29	Right-handed alpha
Helix 22	AC4	D	44	47	Right-handed 310
Helix 23	AC5	D	68	77	Right-handed alpha
Helix 24	AC6	D	84	86	Right-handed 310
Helix 25	AC7	D	98	104	Right-handed alpha
Helix 26	AC8	D	106	109	Right-handed 310
Helix 27	AC9	D	110	123	Right-handed alpha
Helix 28	AD1	D	139	155	Right-handed alpha
Helix 29	AD2	D	178	191	Right-handed alpha
Helix 30	AD3	D	202	212	Right-handed alpha
Helix 31	AD4	D	214	218	Right-handed 310
Helix 32	AD5	D	219	237	Right-handed alpha
Helix 33	AD6	D	247	256	Right-handed alpha
Helix 34	AD7	D	272	276	Right-handed 310
Helix 35	AD8	D	283	293	Right-handed alpha
Helix 36	AD9	D	294	297	Right-handed 310
Helix 37	AE1	D	320	328	Right-handed alpha
Helix 38	AE2	D	329	332	Right-handed 310
Helix 39	AE3	D	369	386	Right-handed alpha
Helix 40	AE4	D	391	396	Right-handed alpha
Helix 41	AE5	D	401	421	Right-handed alpha

There are 5 sheets in PDB entry 9F6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	60	63	parallel
Strand 3	A	4	10	parallel
Strand 4	A	126	134	parallel
Strand 5	A	160	166	parallel
Strand 6	A	194	199	parallel
Strand 7	A	261	267	parallel
Strand 8	A	357	365	anti-parallel
Strand 9	A	306	315	anti-parallel
Strand 10	A	343	348	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	55	58	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	90	first strand
Strand 2	D	61	65	parallel
Strand 3	D	4	10	parallel
Strand 4	D	128	136	parallel
Strand 5	D	161	168	parallel
Strand 6	D	196	201	parallel
Strand 7	D	263	269	parallel
Strand 8	D	359	367	anti-parallel
Strand 9	D	308	317	anti-parallel
Strand 10	D	346	350	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	36	37	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	51	first strand
Strand 2	D	57	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6V