Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F6Z entry

There are 2 chains in PDB entry 9F6Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 80	ARG 882
B	THR 77	ARG 882

There are 65 helices in PDB entry 9F6Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	108	Right-handed alpha
Helix 2	AA2	A	140	146	Right-handed alpha
Helix 3	AA3	A	148	163	Right-handed alpha
Helix 4	AA4	A	287	303	Right-handed alpha
Helix 5	AA5	A	331	349	Right-handed alpha
Helix 6	AA6	A	367	380	Right-handed alpha
Helix 7	AA7	A	401	420	Right-handed alpha
Helix 8	AA8	A	430	434	Right-handed 310
Helix 9	AA9	A	440	452	Right-handed alpha
Helix 10	AB1	A	500	510	Right-handed alpha
Helix 11	AB2	A	512	521	Right-handed alpha
Helix 12	AB3	A	530	534	Right-handed alpha
Helix 13	AB4	A	537	554	Right-handed alpha
Helix 14	AB5	A	562	574	Right-handed alpha
Helix 15	AB6	A	574	579	Right-handed alpha
Helix 16	AB7	A	584	587	Right-handed 310
Helix 17	AB8	A	588	595	Right-handed alpha
Helix 18	AB9	A	616	627	Right-handed alpha
Helix 19	AC1	A	648	654	Right-handed alpha
Helix 20	AC2	A	654	662	Right-handed alpha
Helix 21	AC3	A	677	683	Right-handed alpha
Helix 22	AC4	A	684	694	Right-handed alpha
Helix 23	AC5	A	705	721	Right-handed alpha
Helix 24	AC6	A	722	728	Right-handed alpha
Helix 25	AC7	A	729	736	Right-handed alpha
Helix 26	AC8	A	741	753	Right-handed alpha
Helix 27	AC9	A	756	768	Right-handed alpha
Helix 28	AD1	A	778	784	Right-handed alpha
Helix 29	AD2	A	784	797	Right-handed alpha
Helix 30	AD3	A	822	824	Right-handed 310
Helix 31	AD4	A	841	867	Right-handed alpha
Helix 32	AD5	A	871	880	Right-handed alpha
Helix 33	AD6	B	94	108	Right-handed alpha
Helix 34	AD7	B	140	146	Right-handed alpha
Helix 35	AD8	B	148	163	Right-handed alpha
Helix 36	AD9	B	204	208	Right-handed 310
Helix 37	AE1	B	287	303	Right-handed alpha
Helix 38	AE2	B	331	349	Right-handed alpha
Helix 39	AE3	B	367	381	Right-handed alpha
Helix 40	AE4	B	401	420	Right-handed alpha
Helix 41	AE5	B	430	434	Right-handed 310
Helix 42	AE6	B	440	452	Right-handed alpha
Helix 43	AE7	B	500	510	Right-handed alpha
Helix 44	AE8	B	512	521	Right-handed alpha
Helix 45	AE9	B	530	534	Right-handed alpha
Helix 46	AF1	B	537	554	Right-handed alpha
Helix 47	AF2	B	562	574	Right-handed alpha
Helix 48	AF3	B	574	579	Right-handed alpha
Helix 49	AF4	B	588	595	Right-handed alpha
Helix 50	AF5	B	616	627	Right-handed alpha
Helix 51	AF6	B	648	654	Right-handed alpha
Helix 52	AF7	B	654	662	Right-handed alpha
Helix 53	AF8	B	677	683	Right-handed alpha
Helix 54	AF9	B	684	694	Right-handed alpha
Helix 55	AG1	B	705	721	Right-handed alpha
Helix 56	AG2	B	722	728	Right-handed alpha
Helix 57	AG3	B	729	736	Right-handed alpha
Helix 58	AG4	B	741	753	Right-handed alpha
Helix 59	AG5	B	756	768	Right-handed alpha
Helix 60	AG6	B	778	784	Right-handed alpha
Helix 61	AG7	B	784	797	Right-handed alpha
Helix 62	AG8	B	803	807	Right-handed alpha
Helix 63	AG9	B	822	824	Right-handed 310
Helix 64	AH1	B	841	867	Right-handed alpha
Helix 65	AH2	B	871	880	Right-handed alpha

There are 14 sheets in PDB entry 9F6Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	115	first strand
Strand 2	A	85	89	parallel
Strand 3	A	135	138	parallel
Strand 4	A	165	169	parallel
Strand 5	A	278	281	parallel
Strand 6	A	263	269	anti-parallel
Strand 7	A	216	229	anti-parallel
Strand 8	A	188	200	anti-parallel
Strand 9	A	179	181	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	115	first strand
Strand 2	A	85	89	parallel
Strand 3	A	135	138	parallel
Strand 4	A	165	169	parallel
Strand 5	A	278	281	parallel
Strand 6	A	263	269	anti-parallel
Strand 7	A	235	243	anti-parallel
Strand 8	A	188	200	anti-parallel
Strand 9	A	179	181	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	130	131	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	388	first strand
Strand 2	A	354	358	parallel
Strand 3	A	311	321	parallel
Strand 4	A	523	529	parallel
Strand 5	A	478	485	parallel
Strand 6	A	473	475	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	458	first strand
Strand 2	A	478	485	parallel
Strand 3	A	523	529	parallel
Strand 4	A	311	321	parallel
Strand 5	A	557	559	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	632	first strand
Strand 2	A	672	676	parallel
Strand 3	A	607	611	parallel
Strand 4	A	698	703	parallel
Strand 5	A	773	777	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	808	811	first strand
Strand 2	A	816	820	anti-parallel
Strand 3	A	826	827	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	115	first strand
Strand 2	B	85	89	parallel
Strand 3	B	135	138	parallel
Strand 4	B	166	169	parallel
Strand 5	B	278	281	parallel
Strand 6	B	263	269	anti-parallel
Strand 7	B	216	229	anti-parallel
Strand 8	B	188	200	anti-parallel
Strand 9	B	179	181	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	115	first strand
Strand 2	B	85	89	parallel
Strand 3	B	135	138	parallel
Strand 4	B	166	169	parallel
Strand 5	B	278	281	parallel
Strand 6	B	263	269	anti-parallel
Strand 7	B	235	243	anti-parallel
Strand 8	B	188	200	anti-parallel
Strand 9	B	179	181	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	130	131	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	388	first strand
Strand 2	B	355	358	parallel
Strand 3	B	311	321	parallel
Strand 4	B	523	529	parallel
Strand 5	B	478	485	parallel
Strand 6	B	473	475	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	458	first strand
Strand 2	B	478	485	parallel
Strand 3	B	523	529	parallel
Strand 4	B	311	321	parallel
Strand 5	B	557	559	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	632	first strand
Strand 2	B	672	676	parallel
Strand 3	B	607	611	parallel
Strand 4	B	698	703	parallel
Strand 5	B	773	777	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	808	811	first strand
Strand 2	B	816	820	anti-parallel
Strand 3	B	826	827	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F6Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F6Z