Analysis of interatomic Contacts of Structural Units in PDB entry:
9F79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F79 entry

There are 3 chains in PDB entry 9F79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 196ASP 399
B
 GLY 196ASP 399
C
 LYS 66LEU 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9F79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
199 222Right-handed alpha
Helix 2
AA2
A
223 226Right-handed 310
Helix 3
AA3
A
228 242Right-handed alpha
Helix 4
AA4
A
242 260Right-handed alpha
Helix 5
AA5
A
262 266Right-handed 310
Helix 6
AA6
A
268 279Right-handed alpha
Helix 7
AA7
A
286 295Right-handed alpha
Helix 8
AA8
A
299 304Right-handed alpha
Helix 9
AA9
A
307 315Right-handed alpha
Helix 10
AB1
A
317 334Right-handed alpha
Helix 11
AB2
A
336 341Right-handed 310
Helix 12
AB3
A
342 353Right-handed alpha
Helix 13
AB4
A
357 367Right-handed alpha
Helix 14
AB5
A
374 399Right-handed alpha
Helix 15
AB6
B
198 222Right-handed alpha
Helix 16
AB7
B
223 226Right-handed 310
Helix 17
AB8
B
228 245Right-handed alpha
Helix 18
AB9
B
245 260Right-handed alpha
Helix 19
AC1
B
262 266Right-handed 310
Helix 20
AC2
B
268 279Right-handed alpha
Helix 21
AC3
B
286 295Right-handed alpha
Helix 22
AC4
B
299 304Right-handed alpha
Helix 23
AC5
B
307 315Right-handed alpha
Helix 24
AC6
B
317 334Right-handed alpha
Helix 25
AC7
B
336 341Right-handed 310
Helix 26
AC8
B
342 353Right-handed alpha
Helix 27
AC9
B
357 367Right-handed alpha
Helix 28
AD1
B
374 399Right-handed alpha
Helix 29
AD2
C
69 79Right-handed alpha
Helix 30
AD3
C
85 102Right-handed alpha
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There are no sheets in PDB entry 9F79
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il