Analysis of interatomic Contacts of Structural Units in PDB entry:
9F7M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F7M entry

There are 16 chains in PDB entry 9F7M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	GLY 209
I	G 602	G 603
B	ALA 5	ASP 208
J	G 602	G 603
C	GLY 6	ASP 208
K	G 602	G 603
D	SER 0	ASP 210
L	G 602	G 603
E	SER 0	ASP 208
M	G 602	G 603
F	SER 4	ASP 208
N	G 602	G 603
G	SER 0	ASP 208
O	G 602	G 603
H	SER 0	ASP 208
P	G 602	G 603

There are 80 helices in PDB entry 9F7M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	57	Right-handed alpha
Helix 2	AA2	A	59	69	Right-handed alpha
Helix 3	AA3	A	70	78	Right-handed alpha
Helix 4	AA4	A	81	95	Right-handed alpha
Helix 5	AA5	A	109	121	Right-handed alpha
Helix 6	AA6	A	121	128	Right-handed alpha
Helix 7	AA7	A	135	146	Right-handed alpha
Helix 8	AA8	A	146	152	Right-handed alpha
Helix 9	AA9	A	161	180	Right-handed alpha
Helix 10	AB1	A	188	209	Right-handed alpha
Helix 11	AB2	B	51	57	Right-handed alpha
Helix 12	AB3	B	59	69	Right-handed alpha
Helix 13	AB4	B	70	78	Right-handed alpha
Helix 14	AB5	B	81	94	Right-handed alpha
Helix 15	AB6	B	109	121	Right-handed alpha
Helix 16	AB7	B	121	128	Right-handed alpha
Helix 17	AB8	B	135	146	Right-handed alpha
Helix 18	AB9	B	146	152	Right-handed alpha
Helix 19	AC1	B	161	180	Right-handed alpha
Helix 20	AC2	B	188	208	Right-handed alpha
Helix 21	AC3	C	51	57	Right-handed alpha
Helix 22	AC4	C	59	69	Right-handed alpha
Helix 23	AC5	C	70	78	Right-handed alpha
Helix 24	AC6	C	81	94	Right-handed alpha
Helix 25	AC7	C	109	121	Right-handed alpha
Helix 26	AC8	C	121	128	Right-handed alpha
Helix 27	AC9	C	135	146	Right-handed alpha
Helix 28	AD1	C	146	152	Right-handed alpha
Helix 29	AD2	C	162	178	Right-handed alpha
Helix 30	AD3	C	188	208	Right-handed alpha
Helix 31	AD4	D	51	57	Right-handed alpha
Helix 32	AD5	D	59	69	Right-handed alpha
Helix 33	AD6	D	70	78	Right-handed alpha
Helix 34	AD7	D	81	95	Right-handed alpha
Helix 35	AD8	D	109	121	Right-handed alpha
Helix 36	AD9	D	121	128	Right-handed alpha
Helix 37	AE1	D	135	146	Right-handed alpha
Helix 38	AE2	D	146	152	Right-handed alpha
Helix 39	AE3	D	161	178	Right-handed alpha
Helix 40	AE4	D	188	208	Right-handed alpha
Helix 41	AE5	E	51	57	Right-handed alpha
Helix 42	AE6	E	59	69	Right-handed alpha
Helix 43	AE7	E	70	78	Right-handed alpha
Helix 44	AE8	E	81	95	Right-handed alpha
Helix 45	AE9	E	109	121	Right-handed alpha
Helix 46	AF1	E	121	128	Right-handed alpha
Helix 47	AF2	E	135	146	Right-handed alpha
Helix 48	AF3	E	146	152	Right-handed alpha
Helix 49	AF4	E	161	180	Right-handed alpha
Helix 50	AF5	E	188	204	Right-handed alpha
Helix 51	AF6	F	51	57	Right-handed alpha
Helix 52	AF7	F	59	69	Right-handed alpha
Helix 53	AF8	F	70	78	Right-handed alpha
Helix 54	AF9	F	81	95	Right-handed alpha
Helix 55	AG1	F	109	121	Right-handed alpha
Helix 56	AG2	F	121	128	Right-handed alpha
Helix 57	AG3	F	135	146	Right-handed alpha
Helix 58	AG4	F	146	152	Right-handed alpha
Helix 59	AG5	F	161	178	Right-handed alpha
Helix 60	AG6	F	188	208	Right-handed alpha
Helix 61	AG7	G	51	57	Right-handed alpha
Helix 62	AG8	G	59	69	Right-handed alpha
Helix 63	AG9	G	70	78	Right-handed alpha
Helix 64	AH1	G	81	94	Right-handed alpha
Helix 65	AH2	G	109	121	Right-handed alpha
Helix 66	AH3	G	121	128	Right-handed alpha
Helix 67	AH4	G	135	146	Right-handed alpha
Helix 68	AH5	G	146	152	Right-handed alpha
Helix 69	AH6	G	161	178	Right-handed alpha
Helix 70	AH7	G	188	208	Right-handed alpha
Helix 71	AH8	H	51	57	Right-handed alpha
Helix 72	AH9	H	59	69	Right-handed alpha
Helix 73	AI1	H	70	78	Right-handed alpha
Helix 74	AI2	H	81	95	Right-handed alpha
Helix 75	AI3	H	109	121	Right-handed alpha
Helix 76	AI4	H	121	128	Right-handed alpha
Helix 77	AI5	H	135	146	Right-handed alpha
Helix 78	AI6	H	146	152	Right-handed alpha
Helix 79	AI7	H	161	180	Right-handed alpha
Helix 80	AI8	H	188	208	Right-handed alpha

There are 8 sheets in PDB entry 9F7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	25	34	anti-parallel
Strand 3	A	7	15	anti-parallel
Strand 4	A	105	107	parallel
Strand 5	A	132	134	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	47	first strand
Strand 2	B	25	33	anti-parallel
Strand 3	B	8	15	anti-parallel
Strand 4	B	105	107	parallel
Strand 5	B	132	134	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	47	first strand
Strand 2	C	25	33	anti-parallel
Strand 3	C	8	15	anti-parallel
Strand 4	C	105	107	parallel
Strand 5	C	132	134	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	47	first strand
Strand 2	D	25	34	anti-parallel
Strand 3	D	7	15	anti-parallel
Strand 4	D	105	107	parallel
Strand 5	D	132	134	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	47	first strand
Strand 2	E	25	34	anti-parallel
Strand 3	E	7	15	anti-parallel
Strand 4	E	105	107	parallel
Strand 5	E	132	134	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	47	first strand
Strand 2	F	25	33	anti-parallel
Strand 3	F	8	15	anti-parallel
Strand 4	F	105	107	parallel
Strand 5	F	132	134	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	47	first strand
Strand 2	G	25	34	anti-parallel
Strand 3	G	7	15	anti-parallel
Strand 4	G	105	107	parallel
Strand 5	G	132	134	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	47	first strand
Strand 2	H	25	34	anti-parallel
Strand 3	H	7	15	anti-parallel
Strand 4	H	105	107	parallel
Strand 5	H	132	134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F7M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F7M