Analysis of interatomic Contacts of Structural Units in PDB entry:
9F8E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F8E entry

There are 4 chains in PDB entry 9F8E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	PHE 178
B	THR 5	MET 407
C	ALA 1	SER 179
D	THR 5	MET 407

There are 46 helices in PDB entry 9F8E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	8	Right-handed alpha
Helix 2	AA2	A	22	35	Right-handed alpha
Helix 3	AA3	A	80	90	Right-handed alpha
Helix 4	AA4	A	129	137	Right-handed alpha
Helix 5	AA5	A	141	153	Right-handed alpha
Helix 6	AA6	B	26	46	Right-handed alpha
Helix 7	AA7	B	54	67	Right-handed alpha
Helix 8	AA8	B	94	99	Right-handed alpha
Helix 9	AA9	B	101	108	Right-handed alpha
Helix 10	AB1	B	121	133	Right-handed alpha
Helix 11	AB2	B	155	165	Right-handed alpha
Helix 12	AB3	B	176	189	Right-handed alpha
Helix 13	AB4	B	202	214	Right-handed alpha
Helix 14	AB5	B	244	252	Right-handed alpha
Helix 15	AB6	B	266	278	Right-handed alpha
Helix 16	AB7	B	288	301	Right-handed alpha
Helix 17	AB8	B	305	316	Right-handed alpha
Helix 18	AB9	B	320	324	Right-handed 310
Helix 19	AC1	B	338	341	Right-handed 310
Helix 20	AC2	B	342	347	Right-handed alpha
Helix 21	AC3	B	348	356	Right-handed alpha
Helix 22	AC4	B	367	378	Right-handed alpha
Helix 23	AC5	B	394	405	Right-handed alpha
Helix 24	AC6	C	2	8	Right-handed alpha
Helix 25	AC7	C	22	35	Right-handed alpha
Helix 26	AC8	C	80	90	Right-handed alpha
Helix 27	AC9	C	127	137	Right-handed alpha
Helix 28	AD1	C	141	153	Right-handed alpha
Helix 29	AD2	D	26	46	Right-handed alpha
Helix 30	AD3	D	54	67	Right-handed alpha
Helix 31	AD4	D	101	108	Right-handed alpha
Helix 32	AD5	D	121	133	Right-handed alpha
Helix 33	AD6	D	155	165	Right-handed alpha
Helix 34	AD7	D	176	189	Right-handed alpha
Helix 35	AD8	D	202	214	Right-handed alpha
Helix 36	AD9	D	218	222	Right-handed 310
Helix 37	AE1	D	244	252	Right-handed alpha
Helix 38	AE2	D	266	278	Right-handed alpha
Helix 39	AE3	D	288	301	Right-handed alpha
Helix 40	AE4	D	305	316	Right-handed alpha
Helix 41	AE5	D	320	324	Right-handed 310
Helix 42	AE6	D	338	341	Right-handed 310
Helix 43	AE7	D	342	347	Right-handed alpha
Helix 44	AE8	D	348	356	Right-handed alpha
Helix 45	AE9	D	367	378	Right-handed alpha
Helix 46	AF1	D	394	405	Right-handed alpha

There are 13 sheets in PDB entry 9F8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	19	first strand
Strand 2	A	108	114	parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	47	57	anti-parallel
Strand 5	A	65	74	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	122	first strand
Strand 2	B	18	24	parallel
Strand 3	A	164	168	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	385	389	parallel
Strand 3	B	328	332	parallel
Strand 4	B	359	361	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	115	first strand
Strand 2	B	86	91	parallel
Strand 3	B	144	148	parallel
Strand 4	B	168	172	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	236	first strand
Strand 2	B	194	199	parallel
Strand 3	B	255	259	parallel
Strand 4	B	282	284	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	47	57	anti-parallel
Strand 3	C	72	74	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	47	57	anti-parallel
Strand 3	C	95	102	anti-parallel
Strand 4	C	108	114	anti-parallel
Strand 5	C	15	19	parallel
Strand 6	D	8	9	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	122	first strand
Strand 2	D	18	24	parallel
Strand 3	C	164	168	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	385	389	parallel
Strand 3	D	328	332	parallel
Strand 4	D	359	361	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	115	first strand
Strand 2	D	86	91	parallel
Strand 3	D	144	148	parallel
Strand 4	D	168	172	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	236	first strand
Strand 2	D	194	199	parallel
Strand 3	D	255	259	parallel
Strand 4	D	282	284	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F8E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F8E