Analysis of interatomic Contacts of Structural Units in PDB entry:
9F8F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F8F entry

There are 4 chains in PDB entry 9F8F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 1	MET 394
D	THR 1	MET 394
C	PRO 7	LEU 318
A	PRO 7	GLU 241

There are 47 helices in PDB entry 9F8F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2	6	Right-handed 310
Helix 2	AA2	B	16	36	Right-handed alpha
Helix 3	AA3	B	44	57	Right-handed alpha
Helix 4	AA4	B	83	86	Right-handed 310
Helix 5	AA5	B	87	94	Right-handed alpha
Helix 6	AA6	B	107	119	Right-handed alpha
Helix 7	AA7	B	142	153	Right-handed alpha
Helix 8	AA8	B	163	176	Right-handed alpha
Helix 9	AA9	B	189	201	Right-handed alpha
Helix 10	AB1	B	231	239	Right-handed alpha
Helix 11	AB2	B	253	265	Right-handed alpha
Helix 12	AB3	B	275	286	Right-handed alpha
Helix 13	AB4	B	307	310	Right-handed 310
Helix 14	AB5	B	311	322	Right-handed alpha
Helix 15	AB6	B	354	365	Right-handed alpha
Helix 16	AB7	B	381	392	Right-handed alpha
Helix 17	AB8	D	2	6	Right-handed 310
Helix 18	AB9	D	16	36	Right-handed alpha
Helix 19	AC1	D	44	57	Right-handed alpha
Helix 20	AC2	D	87	94	Right-handed alpha
Helix 21	AC3	D	107	119	Right-handed alpha
Helix 22	AC4	D	142	153	Right-handed alpha
Helix 23	AC5	D	163	176	Right-handed alpha
Helix 24	AC6	D	189	201	Right-handed alpha
Helix 25	AC7	D	231	239	Right-handed alpha
Helix 26	AC8	D	253	265	Right-handed alpha
Helix 27	AC9	D	275	286	Right-handed alpha
Helix 28	AD1	D	307	310	Right-handed 310
Helix 29	AD2	D	311	322	Right-handed alpha
Helix 30	AD3	D	354	365	Right-handed alpha
Helix 31	AD4	D	381	392	Right-handed alpha
Helix 32	AD5	C	18	32	Right-handed alpha
Helix 33	AD6	C	57	72	Right-handed alpha
Helix 34	AD7	C	72	78	Right-handed alpha
Helix 35	AD8	C	101	115	Right-handed alpha
Helix 36	AD9	C	170	179	Right-handed alpha
Helix 37	AE1	C	193	198	Right-handed alpha
Helix 38	AE2	C	267	274	Right-handed alpha
Helix 39	AE3	C	278	289	Right-handed alpha
Helix 40	AE4	A	18	31	Right-handed alpha
Helix 41	AE5	A	57	72	Right-handed alpha
Helix 42	AE6	A	72	78	Right-handed alpha
Helix 43	AE7	A	101	115	Right-handed alpha
Helix 44	AE8	A	170	179	Right-handed alpha
Helix 45	AE9	A	193	198	Right-handed alpha
Helix 46	AF1	A	267	275	Right-handed alpha
Helix 47	AF2	A	278	289	Right-handed alpha

There are 23 sheets in PDB entry 9F8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	B	8	14	parallel
Strand 3	A	306	311	anti-parallel
Strand 4	A	301	303	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	372	376	parallel
Strand 3	B	297	301	parallel
Strand 4	B	346	348	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	72	77	parallel
Strand 3	B	131	135	parallel
Strand 4	B	155	159	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	181	186	parallel
Strand 3	B	242	246	parallel
Strand 4	B	269	271	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	330	first strand
Strand 2	B	335	339	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	259	first strand
Strand 2	D	8	14	parallel
Strand 3	C	306	311	anti-parallel
Strand 4	C	301	303	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	372	376	parallel
Strand 3	D	297	301	parallel
Strand 4	D	346	348	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	72	77	parallel
Strand 3	D	131	135	parallel
Strand 4	D	155	159	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	223	first strand
Strand 2	D	181	186	parallel
Strand 3	D	242	246	parallel
Strand 4	D	269	271	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	330	first strand
Strand 2	D	335	339	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	15	first strand
Strand 2	C	244	251	parallel
Strand 3	C	85	91	anti-parallel
Strand 4	C	35	42	anti-parallel
Strand 5	C	45	51	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	143	144	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	138	first strand
Strand 2	C	127	132	anti-parallel
Strand 3	C	181	184	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	155	first strand
Strand 2	C	162	168	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	228	229	parallel
Strand 3	C	224	225	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	216	first strand
Strand 2	C	234	236	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	276	first strand
Strand 2	C	315	316	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	15	first strand
Strand 2	A	244	251	parallel
Strand 3	A	85	91	anti-parallel
Strand 4	A	35	42	anti-parallel
Strand 5	A	46	51	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	143	144	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	138	first strand
Strand 2	A	127	132	anti-parallel
Strand 3	A	181	184	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	155	first strand
Strand 2	A	162	168	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	228	229	parallel
Strand 3	A	224	225	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	216	first strand
Strand 2	A	234	236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F8F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F8F