Analysis of interatomic Contacts of Structural Units in PDB entry:
9F8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F8Y entry

There are 4 chains in PDB entry 9F8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1VAL 124
A
 MET 1VAL 124
B
 MET 1VAL 124
C
 SER 0VAL 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9F8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
17 28Right-handed alpha
Helix 2
AA2
D
55 64Right-handed alpha
Helix 3
AA3
D
68 79Right-handed alpha
Helix 4
AA4
D
80 84Right-handed 310
Helix 5
AA5
A
17 28Right-handed alpha
Helix 6
AA6
A
55 64Right-handed alpha
Helix 7
AA7
A
68 79Right-handed alpha
Helix 8
AA8
A
80 84Right-handed 310
Helix 9
AA9
B
17 28Right-handed alpha
Helix 10
AB1
B
55 65Right-handed alpha
Helix 11
AB2
B
68 77Right-handed alpha
Helix 12
AB3
B
78 84Right-handed 310
Helix 13
AB4
C
17 28Right-handed alpha
Helix 14
AB5
C
41 43Right-handed 310
Helix 15
AB6
C
55 65Right-handed alpha
Helix 16
AB7
C
68 79Right-handed alpha
Helix 17
AB8
C
80 84Right-handed 310
Helix 18
AB9
C
102 104Right-handed 310
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There are 3 sheets in PDB entry 9F8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 39first strand
Strand 2
D
45 54anti-parallel
Strand 3
D
2 8anti-parallel
Strand 4
D
118 123anti-parallel
Strand 5
D
87 91anti-parallel
Strand 6
D
95 100anti-parallel
Strand 7
D
107 110anti-parallel
Strand 8
A
104 109anti-parallel
Strand 9
A
96 100anti-parallel
Strand 10
A
87 91anti-parallel
Strand 11
A
118 123anti-parallel
Strand 12
A
2 8anti-parallel
Strand 13
A
45 54anti-parallel
Strand 14
A
33 39anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 37first strand
Strand 2
B
47 54anti-parallel
Strand 3
B
2 8anti-parallel
Strand 4
B
118 123anti-parallel
Strand 5
B
87 92anti-parallel
Strand 6
B
95 100anti-parallel
Strand 7
B
105 109anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 39first strand
Strand 2
C
45 54anti-parallel
Strand 3
C
2 8anti-parallel
Strand 4
C
118 123anti-parallel
Strand 5
C
87 92anti-parallel
Strand 6
C
95 100anti-parallel
Strand 7
C
105 110anti-parallel
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